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Items: 1 to 20 of 46

1.
Single-cell transcriptomics illuminates regulatory steps driving anterior-posterior patterning of Drosophila embryonic mesoderm
Jingjing Sun, Chen Zhang, Fan Gao, Angelike Stathopoulos
Cell Rep. Author manuscript; available in PMC 2023 Dec 8.
Published in final edited form as: Cell Rep. 2023 Oct 31; 42(10): 113289. Published online 2023 Oct 19. doi: 10.1016/j.celrep.2023.113289
PMCID:
PMC10704487
AbstractArticlePDF–2.8M
2.
Next-generation large-scale binary protein interaction network for Drosophila melanogaster
Hong-Wen Tang, Kerstin Spirohn, Yanhui Hu, Tong Hao, István A. Kovács, Yue Gao, Richard Binari, Donghui Yang-Zhou, Kenneth H. Wan, Joel S. Bader, Dawit Balcha, Wenting Bian, Benjamin W. Booth, Atina G. Coté, Steffi de Rouck, Alice Desbuleux, Kah Yong Goh, Dae-Kyum Kim, Jennifer J. Knapp, Wen Xing Lee, Irma Lemmens, Cathleen Li, Mian Li, Roujia Li, Hyobin Julianne Lim, Yifang Liu, Katja Luck, Dylan Markey, Carl Pollis, Sudharshan Rangarajan, Jonathan Rodiger, Sadie Schlabach, Yun Shen, Dayag Sheykhkarimli, Bridget TeeKing, Frederick P. Roth, Jan Tavernier, Michael A. Calderwood, David E. Hill, Susan E. Celniker, Marc Vidal, Norbert Perrimon, Stephanie E. Mohr
Nat Commun. 2023; 14: 2162. Published online 2023 Apr 15. doi: 10.1038/s41467-023-37876-0
PMCID:
PMC10105736
AbstractArticlePDF–3.2M
3.
Combined modelling of mRNA decay dynamics and single-molecule imaging in the Drosophila embryo uncovers a role for P-bodies in 5′ to 3′ degradation
Lauren Forbes Beadle, Jennifer C. Love, Yuliya Shapovalova, Artem Artemev, Magnus Rattray, Hilary L. Ashe
PLoS Biol. 2023 Jan; 21(1): e3001956. Published online 2023 Jan 17. doi: 10.1371/journal.pbio.3001956
PMCID:
PMC9882958
AbstractArticlePDF–3.3M
4.
Alcohol-induced Aggression in Drosophila
Annie Park, Tracy Tran, Linda Gutierrez, Christopher J. Stojanik, Julian D. Y. Plyler, Grace A. Thompson, Rudolf A. Bohm, Elizabeth A. Scheuermann, Dean P. Smith, Nigel S. Atkinson
Addict Biol. Author manuscript; available in PMC 2022 Sep 1.
Published in final edited form as: Addict Biol. 2021 Sep; 26(5): e13045. Published online 2021 May 27. doi: 10.1111/adb.13045
PMCID:
PMC9249132
AbstractArticlePDF–1.0M
5.
The molecular landscape of neural differentiation in the developing Drosophila brain revealed by targeted scRNA-seq and multi-informatic analysis
Nigel S. Michki, Ye Li, Kayvon Sanjasaz, Yimeng Zhao, Fred Y. Shen, Logan A. Walker, Wenjia Cao, Cheng-Yu Lee, Dawen Cai
Cell Rep. Author manuscript; available in PMC 2021 May 21.
Published in final edited form as: Cell Rep. 2021 Apr 27; 35(4): 109039. doi: 10.1016/j.celrep.2021.109039
PMCID:
PMC8139287
AbstractArticlePDF–1.6M
6.
Topology-driven protein-protein interaction network analysis detects genetic sub-networks regulating reproductive capacity
Tarun Kumar, Leo Blondel, Cassandra G Extavour
eLife. 2020; 9: e54082. Published online 2020 Sep 9. doi: 10.7554/eLife.54082
PMCID:
PMC7550192
AbstractArticlePDF–2.8M
7.
Coordination between stochastic and deterministic specification in the Drosophila visual system
Maximilien Courgeon, Claude Desplan
Science. Author manuscript; available in PMC 2020 Apr 18.
Published in final edited form as: Science. 2019 Oct 18; 366(6463): eaay6727. Published online 2019 Oct 3. doi: 10.1126/science.aay6727
PMCID:
PMC6819959
AbstractArticlePDF–3.8M
8.
Tissue-specific (ts)CRISPR as an efficient strategy for in vivo screening in Drosophila
Hagar Meltzer, Efrat Marom, Idan Alyagor, Oded Mayseless, Victoria Berkun, Netta Segal-Gilboa, Tamar Unger, David Luginbuhl, Oren Schuldiner
Nat Commun. 2019; 10: 2113. Published online 2019 May 8. doi: 10.1038/s41467-019-10140-0
PMCID:
PMC6506539
AbstractArticlePDF–6.5M
9.
Spatially varying cis-regulatory divergence in Drosophila embryos elucidates cis-regulatory logic
Peter A. Combs, Hunter B. Fraser
PLoS Genet. 2018 Nov; 14(11): e1007631. Published online 2018 Nov 1. doi: 10.1371/journal.pgen.1007631
PMCID:
PMC6211617
AbstractArticlePDF–2.1M
10.
Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species
Piero Sanfilippo, Jiayu Wen, Eric C. Lai
Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0
PMCID:
PMC5707805
AbstractArticlePDF–3.2M
11.
Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster
Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira
RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117
PMCID:
PMC5689002
AbstractArticlePDF–4.0M
12.
Genome-wide identification of Drosophila dorso-ventral enhancers by differential histone acetylation analysis
Nina Koenecke, Jeff Johnston, Bjoern Gaertner, Malini Natarajan, Julia Zeitlinger
Genome Biol. 2016; 17: 196. Published online 2016 Sep 27. doi: 10.1186/s13059-016-1057-2
PMCID:
PMC5037609
AbstractArticlePDF–2.2M
13.
Is Alcoholism Learned? Insights from the Fruit Fly
Brooks G. Robinson, Nigel S. Atkinson
Curr Opin Neurobiol. Author manuscript; available in PMC 2015 Sep 28.
Published in final edited form as: Curr Opin Neurobiol. 2013 Aug; 23(4): 529–534. Published online 2013 Feb 22. doi: 10.1016/j.conb.2013.01.016
PMCID:
PMC4586068
AbstractArticlePDF–377K
14.
Gene expression profiling of brakeless mutant Drosophila embryos
Filip Crona, Bhumica Singla, Mattias Mannervik
Data Brief. 2015 Dec; 5: 134–137. Published online 2015 Sep 5. doi: 10.1016/j.dib.2015.08.033
PMCID:
PMC4579289
AbstractArticlePDF–284K
15.
Gene Model Annotations for Drosophila melanogaster: The Rule-Benders
Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937
PMCID:
PMC4528330
AbstractArticlePDF–2.2M
16.
Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data
Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929
PMCID:
PMC4528329
AbstractArticlePDF–4.9M
17.
The Release 6 reference sequence of the Drosophila melanogaster genome
Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker
Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114
PMCID:
PMC4352887
AbstractArticlePDF–1022K
18.
Phylostratigraphic Bias Creates Spurious Patterns of Genome Evolution
Bryan A. Moyers, Jianzhi Zhang
Mol Biol Evol. 2015 Jan 1; 32(1): 258–267. Published online 2014 Oct 13. doi: 10.1093/molbev/msu286
Correction in:
Mol Biol Evol. 2016 Nov; 33(11): 3031.
PMCID:
PMC4271527
AbstractArticlePDF–618K
19.
Distinct DNA Binding Sites Contribute to the TCF Transcriptional Switch in C. elegans and Drosophila
Chandan Bhambhani, Aditi J. Ravindranath, Remco A. Mentink, Mikyung V. Chang, Marco C. Betist, Yaxuan X. Yang, Sandhya P. Koushika, Hendrik C. Korswagen, Ken M. Cadigan
PLoS Genet. 2014 Feb; 10(2): e1004133. Published online 2014 Feb 6. doi: 10.1371/journal.pgen.1004133
PMCID:
PMC3916239
AbstractArticlePDF–9.8M
20.
Sequencing mRNA from Cryo-Sliced Drosophila Embryos to Determine Genome-Wide Spatial Patterns of Gene Expression
Peter A. Combs, Michael B. Eisen
PLoS One. 2013; 8(8): e71820. Published online 2013 Aug 12. doi: 10.1371/journal.pone.0071820
PMCID:
PMC3741199
AbstractArticlePDF–1.4M

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