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Items: 1 to 20 of 23

1.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
2.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
3.
A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon
Nir Cohen, Naama Aviram, Maya Schuldiner
EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385
PMCID:
PMC10233368
AbstractArticlePDF–1.2M
4.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
5.
Systematic Screening of Penetratin’s Protein Targets by Yeast Proteome Microarrays
Pramod Shah, Chien-Sheng Chen
Int J Mol Sci. 2022 Jan; 23(2): 712. Published online 2022 Jan 10. doi: 10.3390/ijms23020712
PMCID:
PMC8775591
AbstractArticlePDF–5.0M
6.
The histone chaperone Spt6 is required for normal recruitment of the capping enzyme Abd1 to transcribed regions
Rajaraman Gopalakrishnan, Fred Winston
J Biol Chem. 2021 Oct; 297(4): 101205. Published online 2021 Sep 17. doi: 10.1016/j.jbc.2021.101205
PMCID:
PMC8511950
AbstractArticlePDF–3.1M
7.
Functional Anatomy of Phospholipid Binding and Regulation of Phosphoinositide Homeostasis by Proteins of the Sec14 Superfamily
Gabriel Schaaf, Eric A. Ortlund, Kimberly R. Tyeryar, Carl J. Mousley, Kristina E. Ile, Teresa A. Garrett, Jihui Ren, Melissa J. Woolls, Christian R.H. Raetz, Matthew R. Redinbo, Vytas A. Bankaitis
Mol Cell. Author manuscript; available in PMC 2021 Jan 14.
Published in final edited form as: Mol Cell. 2008 Feb 1; 29(2): 191–206. doi: 10.1016/j.molcel.2007.11.026
PMCID:
PMC7808562
AbstractArticlePDF–2.7M
8.
Target identification and mechanism of action of picolinamide and benzamide chemotypes with antifungal properties
Verena Pries, Christina Nöcker, Danish Khan, Philipp Johnen, Zebin Hong, Ashutosh Tripathi, Anna-Lena Keller, Michael Fitz, Francesca Perruccio, Ireos Filipuzzi, Sasikala Thavam, Thomas Aust, Ralph Riedl, Slava Ziegler, Fulvia Bono, Gabriel Schaaf, Vytas Bankaitis, Herbert Waldmann, Dominic Hoepfner
Cell Chem Biol. Author manuscript; available in PMC 2019 Mar 15.
Published in final edited form as: Cell Chem Biol. 2018 Mar 15; 25(3): 279–290.e7. Published online 2018 Jan 4. doi: 10.1016/j.chembiol.2017.12.007
PMCID:
PMC5856591
AbstractArticlePDF–1.8M
9.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
10.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
11.
The Genetic Landscape of a Cell
Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Sep 15.
Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823
PMCID:
PMC5600254
AbstractArticlePDF–2.4M
12.
Integrative proteomics and biochemical analyses define Ptc6p as the Saccharomyces cerevisiae pyruvate dehydrogenase phosphatase
Xiao Guo, Natalie M. Niemi, Joshua J. Coon, David J. Pagliarini
J Biol Chem. 2017 Jul 14; 292(28): 11751–11759. Published online 2017 May 24. doi: 10.1074/jbc.M117.787341
PMCID:
PMC5512070
AbstractArticlePDF–2.1M
13.
A network of conserved synthetic lethal interactions for exploration of precision cancer therapy
Rohith Srivas, John Paul Shen, Chih Cheng Yang, Su Ming Sun, Jianfeng Li, Andrew M. Gross, James Jensen, Katherine Licon, Ana Bojorquez-Gomez, Kristin Klepper, Justin Huang, Daniel Pekin, Jia L. Xu, Huwate Yeerna, Vignesh Sivaganesh, Leonie Kollenstart, Haico van Attikum, Pedro Aza-Blanc, Robert W. Sobol, Trey Ideker
Mol Cell. Author manuscript; available in PMC 2017 Aug 4.
Published in final edited form as: Mol Cell. 2016 Aug 4; 63(3): 514–525. Published online 2016 Jul 21. doi: 10.1016/j.molcel.2016.06.022
PMCID:
PMC5209245
AbstractArticlePDF–1.6M
14.
Structural elements that govern Sec14-like PITP sensitivities to potent small molecule inhibitors
Danish Khan, Kaitlyn R. McGrath, Oleksandra Dorosheva, Vytas A. Bankaitis, Ashutosh Tripathi
J Lipid Res. 2016 Apr; 57(4): 650–662. doi: 10.1194/jlr.M066381
PMCID:
PMC4808773
AbstractArticlePDF–1.4M
15.
Target selection by natural and redesigned PUF proteins
Douglas F. Porter, Yvonne Y. Koh, Brett VanVeller, Ronald T. Raines, Marvin Wickens
Proc Natl Acad Sci U S A. 2015 Dec 29; 112(52): 15868–15873. Published online 2015 Dec 14. doi: 10.1073/pnas.1508501112
PMCID:
PMC4703012
AbstractArticlePDF–1.3M
16.
A phosphatidylinositol transfer protein integrates phosphoinositide signaling with lipid droplet metabolism to regulate a developmental program of nutrient stress–induced membrane biogenesis
Jihui Ren, Coney Pei-Chen Lin, Manish C. Pathak, Brenda R. S. Temple, Aaron H. Nile, Carl J. Mousley, Mara C. Duncan, Debra M. Eckert, Thomas J. Leiker, Pavlina T. Ivanova, David S. Myers, Robert C. Murphy, H. Alex Brown, Jolien Verdaasdonk, Kerry S. Bloom, Eric A. Ortlund, Aaron M. Neiman, Vytas A. Bankaitis
Mol Biol Cell. 2014 Mar 1; 25(5): 712–727. doi: 10.1091/mbc.E13-11-0634
PMCID:
PMC3937096
AbstractArticlePDF–4.5M
17.
The Two Different Isoforms of the RSC Chromatin Remodeling Complex Play Distinct Roles in DNA Damage Responses
Anna L. Chambers, Peter M. Brownlee, Samuel C. Durley, Tracey Beacham, Nicholas A. Kent, Jessica A. Downs
PLoS One. 2012; 7(2): e32016. Published online 2012 Feb 16. doi: 10.1371/journal.pone.0032016
PMCID:
PMC3281108
AbstractArticlePDF–1.6M
18.
Diverse protein kinase interactions identified by protein microarrays reveal novel connections between cellular processes
Joseph Fasolo, Andrea Sboner, Mark G.F. Sun, Haiyuan Yu, Rui Chen, Donald Sharon, Philip M. Kim, Mark Gerstein, Michael Snyder
Genes Dev. 2011 Apr; 25(7): 767–778. doi: 10.1101/gad.1998811
PMCID:
PMC3070938
AbstractArticlePDF–1.2M
19.
Resurrection of a functional phosphatidylinositol transfer protein from a pseudo-Sec14 scaffold by directed evolution
Gabriel Schaaf, Marek Dynowski, Carl J. Mousley, Sweety D. Shah, Peihua Yuan, Eva M. Winklbauer, Marília K. F. de Campos, Kyle Trettin, Mary-Chely Quinones, Tatyana I. Smirnova, Lora L. Yanagisawa, Eric A. Ortlund, Vytas A. Bankaitis
Mol Biol Cell. 2011 Mar 15; 22(6): 892–905. doi: 10.1091/mbc.E10-11-0903
PMCID:
PMC3057712
AbstractArticlePDF–6.4M
20.
A systematic screen for protein–lipid interactions in Saccharomyces cerevisiae
Oriol Gallego, Matthew J Betts, Jelena Gvozdenovic-Jeremic, Kenji Maeda, Christian Matetzki, Carmen Aguilar-Gurrieri, Pedro Beltran-Alvarez, Stefan Bonn, Carlos Fernández-Tornero, Lars Juhl Jensen, Michael Kuhn, Jamie Trott, Vladimir Rybin, Christoph W Müller, Peer Bork, Marko Kaksonen, Robert B Russell, Anne-Claude Gavin
Mol Syst Biol. 2010; 6: 430. Published online 2010 Nov 30. doi: 10.1038/msb.2010.87
PMCID:
PMC3010107
AbstractArticlePDF–1.6M

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