PMC Links for GEO Profiles (Select 52692125) - PMC

Select item 107001381.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 102333682.

A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon

Nir Cohen, Naama Aviram, Maya Schuldiner

EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385

PMCID:: PMC10233368

Abstract Article PDF–1.2M

Select item 92098113.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 67157744.

Network Rewiring of Homologous Recombination Enzymes during Mitotic Proliferation and Meiosis

Philipp Wild, Aitor Susperregui, Ilaria Piazza, Christian Dörig, Ashwini Oke, Meret Arter, Miyuki Yamaguchi, Alexander T. Hilditch, Karla Vuina, Ki Choi Chan, Tatiana Gromova, James E. Haber, Jennifer C. Fung, Paola Picotti, Joao Matos

Mol Cell. 2019 Aug 22; 75(4): 859–874.e4. doi: 10.1016/j.molcel.2019.06.022

PMCID:: PMC6715774

Abstract Article

Select item 56618855.

A global interaction network maps a wiring diagram of cellular function

Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone

Science. Author manuscript; available in PMC 2017 Oct 30.

Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420

PMCID:: PMC5661885

Abstract Article PDF–2.6M

Select item 49635376.

Asymmetric Inheritance of Aggregated Proteins and Age Reset in Yeast Are Regulated by Vac17-Dependent Vacuolar Functions

Sandra Malmgren Hill, Xinxin Hao, Johan Grönvall, Stephanie Spikings-Nordby, Per O. Widlund, Triana Amen, Anna Jörhov, Rebecca Josefson, Daniel Kaganovich, Beidong Liu, Thomas Nyström

Cell Rep. 2016 Jul 19; 16(3): 826–838. Published online 2016 Jul 19. doi: 10.1016/j.celrep.2016.06.016

PMCID:: PMC4963537

Abstract Article

Select item 48925097.

Binding of the Fkh1 Forkhead Associated Domain to a Phosphopeptide within the Mph1 DNA Helicase Regulates Mating-Type Switching in Budding Yeast

Antoinette M. Dummer, Zhangli Su, Rachel Cherney, Koyi Choi, John Denu, Xiaolan Zhao, Catherine A. Fox

PLoS Genet. 2016 Jun; 12(6): e1006094. Published online 2016 Jun 3. doi: 10.1371/journal.pgen.1006094

PMCID:: PMC4892509

Abstract Article PDF–4.0M

Select item 48030548.

Differential regulation of the anti-crossover and replication fork regression activities of Mph1 by Mte1

Xiaoyu Xue, Alma Papusha, Koyi Choi, Jacob N. Bonner, Sandeep Kumar, Hengyao Niu, Hardeep Kaur, Xiao-Feng Zheng, Roberto A. Donnianni, Lucy Lu, Michael Lichten, Xiaolan Zhao, Grzegorz Ira, Patrick Sung

Genes Dev. 2016 Mar 15; 30(6): 687–699. doi: 10.1101/gad.276139.115

PMCID:: PMC4803054

Abstract Article PDF–4.8M

Select item 47030129.

Target selection by natural and redesigned PUF proteins

Douglas F. Porter, Yvonne Y. Koh, Brett VanVeller, Ronald T. Raines, Marvin Wickens

Proc Natl Acad Sci U S A. 2015 Dec 29; 112(52): 15868–15873. Published online 2015 Dec 14. doi: 10.1073/pnas.1508501112

PMCID:: PMC4703012

Abstract Article PDF–1.3M

Select item 444104810.

Selective modulation of the functions of a conserved DNA motor by a histone fold complex

Xiaoyu Xue, Koyi Choi, Jacob N. Bonner, Barnabas Szakal, Yu-Hung Chen, Alma Papusha, Dorina Saro, Hengyao Niu, Grzegorz Ira, Dana Branzei, Patrick Sung, Xiaolan Zhao

Genes Dev. 2015 May 15; 29(10): 1000–1005. doi: 10.1101/gad.259143.115

PMCID:: PMC4441048

Abstract Article PDF–3.3M

Select item 368054211.

Genetic and physical interactions between the yeast ELG1 gene and orthologs of the Fanconi anemia pathway

Shivani Singh, Keren Shemesh, Batia Liefshitz, Martin Kupiec

Cell Cycle. 2013 May 15; 12(10): 1625–1636. Published online 2013 Apr 25. doi: 10.4161/cc.24756

PMCID:: PMC3680542

Abstract Article PDF–1.9M

Select item 341099712.

Rad5-dependent DNA Repair Functions of the Saccharomyces cerevisiae FANCM Protein Homolog Mph1

Danielle L. Daee, Elisa Ferrari, Simonne Longerich, Xiao-feng Zheng, Xiaoyu Xue, Dana Branzei, Patrick Sung, Kyungjae Myung

J Biol Chem. 2012 Aug 3; 287(32): 26563–26575. Published online 2012 Jun 12. doi: 10.1074/jbc.M112.369918

PMCID:: PMC3410997

Abstract Article PDF–2.9M

Select item 332256713.

Characterization of a Highly Conserved Histone Related Protein, Ydl156w, and Its Functional Associations Using Quantitative Proteomic Analyses

Joshua M. Gilmore, Mihaela E. Sardiu, Swaminathan Venkatesh, Brent Stutzman, Allison Peak, Chris W. Seidel, Jerry L. Workman, Laurence Florens, Michael P. Washburn

Mol Cell Proteomics. 2012 Apr; 11(4): M111.011544. Published online 2011 Dec 22. doi: 10.1074/mcp.M111.011544

PMCID:: PMC3322567

Abstract Article PDF–2.3M

Select item 284758714.

A histone-fold complex and FANCM form a conserved DNA remodeling complex to maintain genome stability

Zhijiang Yan, Mathieu Delannoy, Chen Ling, Danielle Daee, Fekret Osman, Parameswary A. Muniandy, Xi Shen, Anneke B. Oostra, Hansen Du, Jurgen Steltenpool, Ti Lin, Beatrice Schuster, Chantal Decaillet, Andrzej Stasiak, Alicja Z. Stasiak, Stacie Stone, Maureen E. Hoatlin, Detlev Schindler, Chris Woodcock, Hans Joenje, Ranjan Sen, Johan P. de Winter, Lei Li, Michael M. Seidman, Matthew C. Whitby, Kyungjae Myung, Angelos Constantinou, Weidong Wang

Mol Cell. Author manuscript; available in PMC 2011 Mar 26.

Published in final edited form as: Mol Cell. 2010 Mar 26; 37(6): 865–878. doi: 10.1016/j.molcel.2010.01.039

PMCID:: PMC2847587

Abstract Article PDF–1.9M

Select item 278735315.

Purification of Nuclear Poly(A)-binding Protein Nab2 Reveals Association with the Yeast Transcriptome and a Messenger Ribonucleoprotein Core Structure

Julien Batisse, Claire Batisse, Aidan Budd, Bettina Böttcher, Ed Hurt

J Biol Chem. 2009 Dec 11; 284(50): 34911–34917. Published online 2009 Oct 19. doi: 10.1074/jbc.M109.062034

PMCID:: PMC2787353

Abstract Article PDF–3.8M

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