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Select item 108724771.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 107001382.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 105166423.

ISW1a modulates cohesin distribution in centromeric and pericentromeric regions

Ireneusz Litwin, Małgorzata Nowicka, Katarzyna Markowska, Ewa Maciaszczyk-Dziubińska, Paulina Tomaszewska, Robert Wysocki, Karol Kramarz

Nucleic Acids Res. 2023 Sep 22; 51(17): 9101–9121. Published online 2023 Jul 24. doi: 10.1093/nar/gkad612

PMCID:: PMC10516642

Abstract Article PDF–2.8M

Select item 103184064.

SUMOylation at the inner nuclear membrane facilitates nuclear envelope biogenesis during mitosis

Natasha O. Saik, Christopher Ptak, Saif Rehman, John D. Aitchison, Ben Montpetit, Richard W. Wozniak

J Cell Biol. 2023 Aug 7; 222(8): e202208137. Published online 2023 Jul 3. doi: 10.1083/jcb.202208137

PMCID:: PMC10318406

Abstract Article PDF–6.0M

Select item 102922105.

Nuclear pore complexes mediate subtelomeric gene silencing by regulating PCNA levels on chromatin

Sanjeev Kumar Choudhry, Maxwell L. Neal, Song Li, Arti T. Navare, Trevor Van Eeuwen, Richard W. Wozniak, Fred D. Mast, Michael P. Rout, John D. Aitchison

J Cell Biol. 2023 Sep 4; 222(9): e202207060. Published online 2023 Jun 26. doi: 10.1083/jcb.202207060

PMCID:: PMC10292210

Abstract Article PDF–5.9M

Select item 96380286.

Yeast Smy2 and its human homologs GIGYF1 and -2 regulate Cdc48/VCP function during transcription stress

Michelle Harreman Lehner, Jane Walker, Kotryna Temcinaite, Anna Herlihy, Michael Taschner, Adam C. Berger, Anita H. Corbett, A. Barbara Dirac Svejstrup, Jesper Q. Svejstrup

Cell Rep. 2022 Oct 25; 41(4): 111536. Published online 2022 Oct 25. doi: 10.1016/j.celrep.2022.111536

PMCID:: PMC9638028

Abstract Article

Select item 96035607.

Profiling Substrate Specificity of the SUMO Protease Ulp1 by the YESS–PSSC System to Advance the Conserved Mechanism for Substrate Cleavage

Faying Zhang, Hui Zheng, Yufan Xian, Haoyue Song, Shengchen Wang, Yueli Yun, Li Yi, Guimin Zhang

Int J Mol Sci. 2022 Oct; 23(20): 12188. Published online 2022 Oct 13. doi: 10.3390/ijms232012188

PMCID:: PMC9603560

Abstract Article PDF–2.9M

Select item 92860238.

Mediator recruits the cohesin loader Scc2 to RNA Pol II-transcribed genes and promotes sister chromatid cohesion

Mark Mattingly, Chris Seidel, Sofía Muñoz, Yan Hao, Ying Zhang, Zhihui Wen, Laurence Florens, Frank Uhlmann, Jennifer L. Gerton

Curr Biol. 2022 Jul 11; 32(13): 2884–2896.e6. doi: 10.1016/j.cub.2022.05.019

PMCID:: PMC9286023

Abstract Article

Select item 92098119.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 858500410.

A nuclear pore sub-complex restricts the propagation of Ty retrotransposons by limiting their transcription

Amandine Bonnet, Carole Chaput, Noé Palmic, Benoit Palancade, Pascale Lesage

PLoS Genet. 2021 Nov; 17(11): e1009889. Published online 2021 Nov 1. doi: 10.1371/journal.pgen.1009889

PMCID:: PMC8585004

Abstract Article PDF–2.5M

Select item 771875111.

Comprehensive Synthetic Genetic Array Analysis of Alleles That Interact with Mutation of the Saccharomyces cerevisiae RecQ Helicases Hrq1 and Sgs1

Elsbeth Sanders, Phoebe A. Nguyen, Cody M. Rogers, Matthew L. Bochman

G3 (Bethesda) 2020 Dec; 10(12): 4359–4368. Published online 2020 Oct 28. doi: 10.1534/g3.120.401709

PMCID:: PMC7718751

Abstract Article PDF–1.2M

Select item 767243312.

Altered rRNA processing disrupts nuclear RNA homeostasis via competition for the poly(A)-binding protein Nab2

Lisbeth-Carolina Aguilar, Biplab Paul, Taylor Reiter, Louis Gendron, Arvind Arul Nambi Rajan, Rachel Montpetit, Christian Trahan, Sebastian Pechmann, Marlene Oeffinger, Ben Montpetit

Nucleic Acids Res. 2020 Nov 18; 48(20): 11675–11694. Published online 2020 Nov 2. doi: 10.1093/nar/gkaa964

PMCID:: PMC7672433

Abstract Article PDF–6.0M

Select item 761085213.

Formation and Nuclear Export of Preribosomes Are Functionally Linked to the Small-Ubiquitin-Related Modifier Pathway

Vikram Govind Panse, Dieter Kressler, Andrea Pauli, Elisabeth Petfalski, Maren Gnädig, David Tollervey, Ed Hurt

Traffic. Author manuscript; available in PMC 2021 May 27.

Published in final edited form as: Traffic. 2006 Oct 1; 7(10): 1311–21. doi: 10.1111/j.1600-0854.2006.00471.x

PMCID:: PMC7610852

Abstract Article PDF–1.9M

Select item 751569414.

RNA-binding and prion domains: the Yin and Yang of phase separation

Nieves Lorenzo Gotor, Alexandros Armaos, Giulia Calloni, Marc Torrent Burgas, R Martin Vabulas, Natalia Sanchez De Groot, Gian Gaetano Tartaglia

Nucleic Acids Res. 2020 Sep 25; 48(17): 9491–9504. Published online 2020 Aug 28. doi: 10.1093/nar/gkaa681

PMCID:: PMC7515694

Abstract Article PDF–3.1M

Select item 750740215.

Systematic analysis of bypass suppression of essential genes

Jolanda van Leeuwen, Carles Pons, Guihong Tan, Zi Yang Wang, Jing Hou, Jochen Weile, Marinella Gebbia, Wendy Liang, Ermira Shuteriqi, Zhijian Li, Maykel Lopes, Matej Ušaj, Andreia Dos Santos Lopes, Natascha van Lieshout, Chad L Myers, Frederick P Roth, Patrick Aloy, Brenda J Andrews, Charles Boone

Mol Syst Biol. 2020 Sep; 16(9): e9828. Published online 2020 Sep 17. doi: 10.15252/msb.20209828

PMCID:: PMC7507402

Abstract Article PDF–1.9M

Select item 708817516.

A Novel Strategy for the Preparation of Codon-Optimized Truncated Ulp1 and its Simplified Application to Cleavage the SUMO Fusion Protein

Xiaohua Wang, Haifeng Liu, Yawei Liu, Yuting Li, Lei Yan, Xiaohuan Yuan, Yufei Zhang, Yan Wu, Jieting Liu, Chunlei Zhang, Yanhui Chu

Protein J. 2016; 35(2): 115–123. Published online 2016 Mar 10. doi: 10.1007/s10930-016-9654-1

PMCID:: PMC7088175

Abstract Article PDF–2.1M

Select item 706790517.

Recruitment of an Activated Gene to the Yeast Nuclear Pore Complex Requires Sumoylation

Natasha O. Saik, Nogi Park, Christopher Ptak, Neil Adames, John D. Aitchison, Richard W. Wozniak

Front Genet. 2020; 11: 174. Published online 2020 Mar 6. doi: 10.3389/fgene.2020.00174

PMCID:: PMC7067905

Abstract Article PDF–1.9M

Select item 646748418.

SUMOylation of the nuclear pore complex basket is involved in sensing cellular stresses

Hanne Folz, Carlos A. Niño, Surayya Taranum, Stefanie Caesar, Lorenz Latta, François Waharte, Jean Salamero, Gabriel Schlenstedt, Catherine Dargemont

J Cell Sci. 2019 Apr 1; 132(7): jcs224279. Published online 2019 Apr 3. doi: 10.1242/jcs.224279

PMCID:: PMC6467484

Abstract Article

Select item 645064319.

The mRNA export adaptor Yra1 contributes to DNA double-strand break repair through its C-box domain

Valentina Infantino, Evelina Tutucci, Noël Yeh Martin, Audrey Zihlmann, Varinia Garcia-Molinero, Géraldine Silvano, Benoit Palancade, Françoise Stutz

PLoS One. 2019; 14(4): e0206336. Published online 2019 Apr 5. doi: 10.1371/journal.pone.0206336

PMCID:: PMC6450643

Abstract Article PDF–1.9M

Select item 621627720.

A role for Mog1 in H2Bub1 and H3K4me3 regulation affecting RNAPII transcription and mRNA export

Paula Oliete‐Calvo, Joan Serrano‐Quílez, Carme Nuño‐Cabanes, María E Pérez‐Martínez, Luis M Soares, Bernhard Dichtl, Stephen Buratowski, José E Pérez‐Ortín, Susana Rodríguez‐Navarro

EMBO Rep. 2018 Nov; 19(11): e45992. Published online 2018 Sep 24. doi: 10.15252/embr.201845992