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Items: 1 to 20 of 45

1.
Functional characterization and comparative analysis of gene repression-mediating domains interacting with yeast pleiotropic corepressors Sin3, Cyc8 and Tup1
Julia Lettow, Felix Kliewe, Rasha Aref, Hans-Joachim Schüller
Curr Genet. 2023; 69(2-3): 127–139. Published online 2023 Mar 1. doi: 10.1007/s00294-023-01262-6
PMCID:
PMC10163088
AbstractArticlePDF–1.2M
2.
A synthetic genetic array screen for interactions with the RNA helicase DED1 during cell stress in budding yeast
Sara B Carey, Hannah M List, Ashwin Siby, Paolo Guerra, Timothy A Bolger
G3 (Bethesda) 2023 Jan; 13(1): jkac296. Published online 2022 Nov 21. doi: 10.1093/g3journal/jkac296
PMCID:
PMC9836348
AbstractArticlePDF–857K
3.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
4.
Comprehensive Synthetic Genetic Array Analysis of Alleles That Interact with Mutation of the Saccharomyces cerevisiae RecQ Helicases Hrq1 and Sgs1
Elsbeth Sanders, Phoebe A. Nguyen, Cody M. Rogers, Matthew L. Bochman
G3 (Bethesda) 2020 Dec; 10(12): 4359–4368. Published online 2020 Oct 28. doi: 10.1534/g3.120.401709
PMCID:
PMC7718751
AbstractArticlePDF–1.2M
5.
Chinese Yellow Rice Wine Processing with Reduced Ethyl Carbamate Formation by Deleting Transcriptional Regulator Dal80p in Saccharomyces cerevisiae
Tianyu Wei, Zhihua Jiao, Jingjin Hu, Hanghang Lou, Qihe Chen
Molecules. 2020 Aug; 25(16): 3580. Published online 2020 Aug 6. doi: 10.3390/molecules25163580
PMCID:
PMC7464398
AbstractArticlePDF–2.2M
6.
Transcription-dependent spreading of the Dal80 yeast GATA factor across the body of highly expressed genes
Aria Ronsmans, Maxime Wery, Ugo Szachnowski, Camille Gautier, Marc Descrimes, Evelyne Dubois, Antonin Morillon, Isabelle Georis
PLoS Genet. 2019 Feb; 15(2): e1007999. Published online 2019 Feb 28. doi: 10.1371/journal.pgen.1007999
PMCID:
PMC6413948
AbstractArticlePDF–3.0M
7.
The cellular economy of the Saccharomyces cerevisiae zinc proteome
Yirong Wang, Erin Weisenhorn, Colin MacDiarmid, Claudia Andreini, Michael Bucci, Janet Taggart, Lucia Banci, Jason Russell, Joshua J. Coon, David J. Eide
Metallomics. Author manuscript; available in PMC 2019 Dec 12.
Published in final edited form as: Metallomics. 2018 Dec 12; 10(12): 1755–1776. doi: 10.1039/c8mt00269j
PMCID:
PMC6291366
AbstractArticlePDF–3.0M
8.
Systematic identification of factors mediating accelerated mRNA degradation in response to changes in environmental nitrogen
Darach Miller, Nathan Brandt, David Gresham
PLoS Genet. 2018 May; 14(5): e1007406. Published online 2018 May 21. doi: 10.1371/journal.pgen.1007406
PMCID:
PMC5983874
AbstractArticlePDF–3.9M
9.
An incoherent feedforward loop facilitates adaptive tuning of gene expression
Jungeui Hong, Nathan Brandt, Farah Abdul-Rahman, Ally Yang, Tim Hughes, David Gresham
eLife. 2018; 7: e32323. Published online 2018 Apr 5. doi: 10.7554/eLife.32323
PMCID:
PMC5903863
AbstractArticlePDF–2.4M
10.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
11.
The Genetic Landscape of a Cell
Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Sep 15.
Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823
PMCID:
PMC5600254
AbstractArticlePDF–2.4M
12.
A Functional Link Between Bir1 and the Saccharomyces cerevisiae Ctf19 Kinetochore Complex Revealed Through Quantitative Fitness Analysis
Vasso Makrantoni, Adam Ciesiolka, Conor Lawless, Josefin Fernius, Adele Marston, David Lydall, Michael J. R. Stark
G3 (Bethesda) 2017 Sep; 7(9): 3203–3215. Published online 2017 Jul 28. doi: 10.1534/g3.117.300089
PMCID:
PMC5592945
AbstractArticlePDF–1.7M
13.
A novel translational control mechanism involving RNA structures within coding sequences
Jennifer Jungfleisch, Danny D. Nedialkova, Ivan Dotu, Katherine E. Sloan, Neus Martinez-Bosch, Lukas Brüning, Emanuele Raineri, Pilar Navarro, Markus T. Bohnsack, Sebastian A. Leidel, Juana Díez
Genome Res. 2017 Jan; 27(1): 95–106. doi: 10.1101/gr.209015.116
Correction in:
Genome Res. 2017 Apr; 27(4): 663.
PMCID:
PMC5204348
AbstractArticlePDF–1.3M
14.
An inter‐species protein–protein interaction network across vast evolutionary distance
Quan Zhong, Samuel J Pevzner, Tong Hao, Yang Wang, Roberto Mosca, Jörg Menche, Mikko Taipale, Murat Taşan, Changyu Fan, Xinping Yang, Patrick Haley, Ryan R Murray, Flora Mer, Fana Gebreab, Stanley Tam, Andrew MacWilliams, Amélie Dricot, Patrick Reichert, Balaji Santhanam, Lila Ghamsari, Michael A Calderwood, Thomas Rolland, Benoit Charloteaux, Susan Lindquist, Albert‐László Barabási, David E Hill, Patrick Aloy, Michael E Cusick, Yu Xia, Frederick P Roth, Marc Vidal
Mol Syst Biol. 2016 Apr; 12(4): 865. Published online 2016 Apr 23. doi: 10.15252/msb.20156484
PMCID:
PMC4848758
AbstractArticlePDF–2.1M
15.
Ammonia Regulates VID30 Expression and Vid30p Function Shifts Nitrogen Metabolism toward Glutamate Formation Especially when Saccharomyces cerevisiae Is Grown in Low Concentrations of Ammonia
George K. van der Merwe, Terrance G. Cooper, Hennie J. J. van Vuuren
J Biol Chem. Author manuscript; available in PMC 2015 Apr 3.
Published in final edited form as: J Biol Chem. 2001 Aug 3; 276(31): 28659–28666. Published online 2001 May 16. doi: 10.1074/jbc.M102280200
PMCID:
PMC4384459
AbstractArticlePDF–1.2M
16.
Roles of the Dal82p Domains in Allophanate/Oxalurate-dependent Gene Expression in Saccharomyces cerevisiae
Stephanie Scott, Ashraf T. Abul-Hamd, Terrance G. Cooper
J Biol Chem. Author manuscript; available in PMC 2015 Apr 1.
Published in final edited form as: J Biol Chem. 2000 Oct 6; 275(40): 30886–30893. doi: 10.1074/jbc.M005624200
PMCID:
PMC4382018
AbstractArticlePDF–1.0M
17.
Nitrogen Catabolite Repression of DAL80 Expression Depends on the Relative Levels of Gat1p and Ure2p Production in Saccharomyces cerevisiae
Thomas S. Cunningham, Roopa Andhare, Terrance G. Cooper
J Biol Chem. Author manuscript; available in PMC 2015 Apr 1.
Published in final edited form as: J Biol Chem. 2000 May 12; 275(19): 14408–14414. doi: 10.1074/jbc.275.19.14408
PMCID:
PMC4382002
AbstractArticlePDF–1.1M
18.
Leveraging transcription factors to speed cellobiose fermentation by Saccharomyces cerevisiae
Yuping Lin, Kulika Chomvong, Ligia Acosta-Sampson, Raíssa Estrela, Jonathan M Galazka, Soo Rin Kim, Yong-Su Jin, Jamie HD Cate
Biotechnol Biofuels. 2014; 7: 126. Published online 2014 Aug 27. doi: 10.1186/s13068-014-0126-6
PMCID:
PMC4243952
AbstractArticlePDF–2.0M
19.
The Yeast SR-Like Protein Npl3 Links Chromatin Modification to mRNA Processing
Erica A. Moehle, Colm J. Ryan, Nevan J. Krogan, Tracy L. Kress, Christine Guthrie
PLoS Genet. 2012 Nov; 8(11): e1003101. Published online 2012 Nov 29. doi: 10.1371/journal.pgen.1003101
PMCID:
PMC3510044
AbstractArticlePDF–3.4M
20.
A mitochondrial-focused genetic interaction map reveals a scaffold-like complex required for inner membrane organization in mitochondria
Suzanne Hoppins, Sean R. Collins, Ann Cassidy-Stone, Eric Hummel, Rachel M. DeVay, Laura L. Lackner, Benedikt Westermann, Maya Schuldiner, Jonathan S. Weissman, Jodi Nunnari
J Cell Biol. 2011 Oct 17; 195(2): 323–340. doi: 10.1083/jcb.201107053
PMCID:
PMC3198156
AbstractArticlePDF–4.1M

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