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Select item 99385901.

Proximity labeling reveals a new in vivo network of interactors for the histone demethylase KDM5

Matanel Yheskel, Simone Sidoli, Julie Secombe

Epigenetics Chromatin. 2023; 16: 8. Published online 2023 Feb 18. doi: 10.1186/s13072-023-00481-y

PMCID:: PMC9938590

Abstract Article PDF–4.8M

Select item 95438802.

A genome-wide CRISPR screen identifies DPM1 as a modifier of DPAGT1 deficiency and ER stress

Hans M. Dalton, Raghuvir Viswanatha, Roderick Brathwaite, Jr., Jae Sophia Zuno, Alexys R. Berman, Rebekah Rushforth, Stephanie E. Mohr, Norbert Perrimon, Clement Y. Chow

PLoS Genet. 2022 Sep; 18(9): e1010430. Published online 2022 Sep 27. doi: 10.1371/journal.pgen.1010430

PMCID:: PMC9543880

Abstract Article PDF–2.5M

Select item 87003163.

When Down Is Up: Heterochromatin, Nuclear Organization and X Upregulation

Reem Makki, Victoria H. Meller

Cells. 2021 Dec; 10(12): 3416. Published online 2021 Dec 4. doi: 10.3390/cells10123416

PMCID:: PMC8700316

Abstract Article PDF–988K

Select item 84962704.

Genome-wide analysis in Drosophila reveals diet-by-gene interactions and uncovers diet-responsive genes

Deanne Francis, Shila Ghazanfar, Essi Havula, James R Krycer, Dario Strbenac, Alistair Senior, Annabel Y Minard, Thomas Geddes, Marin E Nelson, Fiona Weiss, Jacqueline Stöckli, Jean Y H Yang, David E James

G3 (Bethesda) 2021 Oct; 11(10): jkab171. Published online 2021 May 27. doi: 10.1093/g3journal/jkab171

PMCID:: PMC8496270

Abstract Article PDF–819K

Select item 80494945.

Functional assessment of the “two-hit” model for neurodevelopmental defects in Drosophila and X. laevis

Lucilla Pizzo, Micaela Lasser, Tanzeen Yusuff, Matthew Jensen, Phoebe Ingraham, Emily Huber, Mayanglambam Dhruba Singh, Connor Monahan, Janani Iyer, Inshya Desai, Siddharth Karthikeyan, Dagny J. Gould, Sneha Yennawar, Alexis T. Weiner, Vijay Kumar Pounraja, Arjun Krishnan, Melissa M. Rolls, Laura Anne Lowery, Santhosh Girirajan

PLoS Genet. 2021 Apr; 17(4): e1009112. Published online 2021 Apr 5. doi: 10.1371/journal.pgen.1009112

PMCID:: PMC8049494

Abstract Article PDF–6.0M

Select item 60632236.

Chromatin That Guides Dosage Compensation Is Modulated by the siRNA Pathway in Drosophila melanogaster

Nikita Deshpande, Victoria H. Meller

Genetics. 2018 Aug; 209(4): 1085–1097. Published online 2018 Jun 19. doi: 10.1534/genetics.118.301173

PMCID:: PMC6063223

Abstract Article PDF–1.2M

Select item 60513477.

A genome-wide RNAi screen identifies MASK as a positive regulator of cytokine receptor stability

Katherine H. Fisher, Maria Fragiadaki, Dhamayanthi Pugazhendhi, Nina Bausek, Maria A. Arredondo, Sally J. Thomas, Stephen Brown, Martin P. Zeidler

J Cell Sci. 2018 Jul 1; 131(13): jcs209551. Published online 2018 Jul 6. doi: 10.1242/jcs.209551

PMCID:: PMC6051347

Abstract Article

Select item 58374428.

Editor’s Highlight: Genetic Targets of Acute Toluene Inhalation in Drosophila melanogaster

Philip J. Bushnell, William O. Ward, Tatiana V. Morozova, Wendy M. Oshiro, Mimi T. Lin, Richard S. Judson, Susan D. Hester, John M. McKee, Mark Higuchi

Toxicol Sci. 2017 Mar; 156(1): 230–239. Published online 2016 Dec 24. doi: 10.1093/toxsci/kfw243

PMCID:: PMC5837442

Abstract Article PDF–661K

Select item 57078059.

Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species

Piero Sanfilippo, Jiayu Wen, Eric C. Lai

Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0

PMCID:: PMC5707805

Abstract Article PDF–3.2M

Select item 568900210.

Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster

Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira

RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117

PMCID:: PMC5689002

Abstract Article PDF–4.0M

Select item 545992711.

Comparative genomic analysis of SET domain family reveals the origin, expansion, and putative function of the arthropod-specific SmydA genes as histone modifiers in insects

Feng Jiang, Qing Liu, Yanli Wang, Jie Zhang, Huimin Wang, Tianqi Song, Meiling Yang, Xianhui Wang, Le Kang

Gigascience. 2017 Jun; 6(6): 1–16. Published online 2017 Apr 22. doi: 10.1093/gigascience/gix031

PMCID:: PMC5459927

Abstract Article PDF–1.8M

Select item 540616712.

Mobile-phone radiation-induced perturbation of gene-expression profiling, redox equilibrium and sporadic-apoptosis control in the ovary of Drosophila melanogaster

Areti K. Manta, Deppie Papadopoulou, Alexander P. Polyzos, Adamantia F. Fragopoulou, Aikaterini S. Skouroliakou, Dimitris Thanos, Dimitrios J. Stravopodis, Lukas H. Margaritis

Fly (Austin) 2017; 11(2): 75–95. Published online 2016 Dec 14. doi: 10.1080/19336934.2016.1270487

PMCID:: PMC5406167

Abstract Article PDF–1.4M

Select item 529560713.

upSET, the Drosophila homologue of SET3, Is Required for Viability and the Proper Balance of Active and Repressive Chromatin Marks

Kyle A. McElroy, Youngsook L. Jung, Barry M. Zee, Charlotte I. Wang, Peter J. Park, Mitzi I. Kuroda

G3 (Bethesda) 2017 Feb; 7(2): 625–635. Published online 2017 Jan 4. doi: 10.1534/g3.116.037788

PMCID:: PMC5295607

Abstract Article PDF–1.8M

Select item 498752314.

Early programming of the oocyte epigenome temporally controls late prophase I transcription and chromatin remodelling

Paulo Navarro-Costa, Alicia McCarthy, Pedro Prudêncio, Christina Greer, Leonardo G. Guilgur, Jörg D. Becker, Julie Secombe, Prashanth Rangan, Rui G. Martinho

Nat Commun. 2016; 7: 12331. Published online 2016 Aug 10. doi: 10.1038/ncomms12331

PMCID:: PMC4987523

Abstract Article PDF–3.1M

Select item 498148115.

The Insulator Protein Suppressor of Hairy Wing Is Required for Proper Ring Canal Development During Oogenesis in Drosophila

Shih-Jui Hsu, Maria P. Plata, Ben Ernest, Saghi Asgarifar, Mariano Labrador

Dev Biol. Author manuscript; available in PMC 2016 Aug 11.

Published in final edited form as: Dev Biol. 2015 Jul 1; 403(1): 57–68. Published online 2015 Apr 14. doi: 10.1016/j.ydbio.2015.03.024

PMCID:: PMC4981481

Abstract Article PDF–1.1M

Select item 476377716.

Streamlined discovery of cross-linked chromatin complexes and associated histone modifications by mass spectrometry

Barry M. Zee, Artyom A. Alekseyenko, Kyle A. McElroy, Mitzi I. Kuroda

Proc Natl Acad Sci U S A. 2016 Feb 16; 113(7): 1784–1789. Published online 2016 Feb 1. doi: 10.1073/pnas.1522750113

PMCID:: PMC4763777

Abstract Article PDF–850K

Select item 457069717.

Putative synaptic genes defined from a Drosophila whole body developmental transcriptome by a machine learning approach

Flavio Pazos Obregón, Cecilia Papalardo, Sebastián Castro, Gustavo Guerberoff, Rafael Cantera

BMC Genomics. 2015; 16(1): 694. Published online 2015 Sep 15. doi: 10.1186/s12864-015-1888-3

PMCID:: PMC4570697

Abstract Article PDF–2.0M

Select item 452833018.

Gene Model Annotations for Drosophila melanogaster: The Rule-Benders

Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium

G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937

PMCID:: PMC4528330

Abstract Article PDF–2.2M

Select item 452832919.

Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data

Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium

G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929

PMCID:: PMC4528329

Abstract Article PDF–4.9M

Select item 435288720.

The Release 6 reference sequence of the Drosophila melanogaster genome

Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker

Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114

PMCID:: PMC4352887

Abstract Article PDF–1022K

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