PMC Links for GEO Profiles (Select 52748557) - PMC

Select item 105924881.

Spatial single-cell sequencing of meiosis I arrested oocytes indicates acquisition of maternal transcripts from the soma

Kenneth A. Trimmer, Peisen Zhao, Jacob Seemann, Shin-Yu Chen, Sudip Mondal, Adela Ben-Yakar, Swathi Arur

Cell Rep. Author manuscript; available in PMC 2023 Oct 23.

Published in final edited form as: Cell Rep. 2023 Jun 27; 42(6): 112544. Published online 2023 May 24. doi: 10.1016/j.celrep.2023.112544

PMCID:: PMC10592488

Abstract Article PDF–3.4M

Select item 102596592.

The in vivo functional significance of PUF hub partnerships in C. elegans germline stem cells

Ahlan S. Ferdous, Stephany J. Costa Dos Santos, Charlotte R. Kanzler, Heaji Shin, Brian H. Carrick, Sarah L. Crittenden, Marvin Wickens, Judith Kimble

Development. 2023 May 1; 150(9): dev201705. Published online 2023 May 9. doi: 10.1242/dev.201705

PMCID:: PMC10259659

Abstract Article

Select item 99220293.

TRIM-NHL protein, NHL-2, modulates cell fate choices in the C. elegans germ line

John L. Brenner, Erin M. Jyo, Ariz Mohammad, Paul Fox, Vovanti Jones, Elaine Mardis, Tim Schedl, Eleanor M. Maine

Dev Biol. Author manuscript; available in PMC 2023 Feb 11.

Published in final edited form as: Dev Biol. 2022 Nov; 491: 43–55. Published online 2022 Sep 3. doi: 10.1016/j.ydbio.2022.08.010

PMCID:: PMC9922029

Abstract Article PDF–2.5M

Select item 90715224.

Ubiquitin ligases and a processive proteasome facilitate protein clearance during the oocyte-to-embryo transition in Caenorhabditis elegans

Caroline A Spike, Tatsuya Tsukamoto, David Greenstein

Genetics. 2022 May; 221(1): iyac051. Published online 2022 Apr 4. doi: 10.1093/genetics/iyac051

PMCID:: PMC9071522

Abstract Article PDF–1.9M

Select item 82630665.

Antagonistic fungal enterotoxins intersect at multiple levels with host innate immune defences

Xing Zhang, Benjamin W. Harding, Dina Aggad, Damien Courtine, Jia-Xuan Chen, Nathalie Pujol, Jonathan J. Ewbank

PLoS Genet. 2021 Jun; 17(6): e1009600. Published online 2021 Jun 24. doi: 10.1371/journal.pgen.1009600

PMCID:: PMC8263066

Abstract Article PDF–5.0M

Select item 79951766.

EPIC: Software Toolkit for Elution Profile-Based Inference of Protein Complexes

Lucas ZhongMing Hu, Florian Goebels, June H. Tan, Eric Wolf, Uros Kuzmanov, Cuihong Wan, Sadhna Phanse, Changjiang Xu, Mike Schertzberg, Andrew G. Fraser, Gary D. Bader, Andrew Emili

Nat Methods. Author manuscript; available in PMC 2021 Mar 26.

Published in final edited form as: Nat Methods. 2019 Aug; 16(8): 737–742. Published online 2019 Jul 15. doi: 10.1038/s41592-019-0461-4

PMCID:: PMC7995176

Abstract Article PDF–1.0M

Select item 69444057.

A PUF Hub Drives Self-Renewal in Caenorhabditis elegans Germline Stem Cells

Kimberly A. Haupt, Kimberley T. Law, Amy L. Enright, Charlotte R. Kanzler, Heaji Shin, Marvin Wickens, Judith Kimble

Genetics. 2020 Jan; 214(1): 147–161. Published online 2019 Nov 18. doi: 10.1534/genetics.119.302772

PMCID:: PMC6944405

Abstract Article PDF–2.4M

Select item 67467568.

Identification of proteins and miRNAs that specifically bind an mRNA in vivo

Kathrin Theil, Koshi Imami, Nikolaus Rajewsky

Nat Commun. 2019; 10: 4205. Published online 2019 Sep 16. doi: 10.1038/s41467-019-12050-7

PMCID:: PMC6746756

Abstract Article PDF–6.8M

Select item 62165909.

OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes

Woojin Kim, Ryan S. Underwood, Iva Greenwald, Daniel D. Shaye

Genetics. 2018 Oct; 210(2): 445–461. Published online 2018 Aug 17. doi: 10.1534/genetics.118.301307

PMCID:: PMC6216590

Abstract Article PDF–1.4M

Select item 585563210.

The PUF Protein Family: Overview on PUF RNA Targets, Biological Functions, and Post Transcriptional Regulation

Ming Wang, Laurent Ogé, Maria-Dolores Perez-Garcia, Latifa Hamama, Soulaiman Sakr

Int J Mol Sci. 2018 Feb; 19(2): 410. Published online 2018 Jan 30. doi: 10.3390/ijms19020410

PMCID:: PMC5855632

Abstract Article PDF–729K

Select item 478153811.

RNA-binding proteins.

Min-Ho Lee, Tim Schedl

WormBook. 2006 : 1–13. Published online 2006 Apr 18. doi: 10.1895/wormbook.1.79.1

PMCID:: PMC4781538

Abstract Article

Select item 457390212.

The Regulatory Landscape of Lineage Differentiation in a Metazoan Embryo

Zhuo Du, Anthony Santella, Fei He, Pavak K. Shah, Yuko Kamikawa, Zhirong Bao

Dev Cell. Author manuscript; available in PMC 2016 Sep 14.

Published in final edited form as: Dev Cell. 2015 Sep 14; 34(5): 592–607. Published online 2015 Aug 27. doi: 10.1016/j.devcel.2015.07.014

PMCID:: PMC4573902

Abstract Article PDF–2.6M

Select item 336150313.

A network of PUF proteins and Ras signaling promote mRNA repression and oogenesis in C. elegans

Arnaud Hubstenberger, Cristiana Cameron, Rebecca Shtofman, Shiri Gutman, Thomas C. Evans

Dev Biol. Author manuscript; available in PMC 2013 Jun 15.

Published in final edited form as: Dev Biol. 2012 Jun 15; 366(2): 218–231. Published online 2012 Apr 19. doi: 10.1016/j.ydbio.2012.03.019

PMCID:: PMC3361503

Abstract Article PDF–2.6M

Select item 310207714.

OrthoList: A Compendium of C. elegans Genes with Human Orthologs

Daniel D. Shaye, Iva Greenwald

PLoS One. 2011; 6(5): e20085. Published online 2011 May 25. doi: 10.1371/journal.pone.0020085

Correction in:: PLoS One. 2014; 9(1): 10.1371/annotation/f5ffb738-a176-4a43-b0e0-249cdea45fe0.

PMCID:: PMC3102077

Abstract Article PDF–530K

Select item 278742815.

A Genomewide RNAi Screen for Genes That Affect the Stability, Distribution and Function of P Granules in Caenorhabditis elegans

Dustin L. Updike, Susan Strome

Genetics. 2009 Dec; 183(4): 1397–1419. doi: 10.1534/genetics.109.110171

PMCID:: PMC2787428

Abstract Article PDF–6.6M

Select item 259647816.

A protein domain-based interactome network for C. elegans early embryogenesis

Mike Boxem, Zoltan Maliga, Niels Klitgord, Na Li, Irma Lemmens, Miyeko Mana, Lorenzo de Lichtervelde, Joram D. Mul, Diederik van de Peut, Maxime Devos, Nicolas Simonis, Muhammed A. Yildirim, Murat Cokol, Huey-Ling Kao, Anne-Sophie de Smet, Haidong Wang, Anne-Lore Schlaitz, Tong Hao, Stuart Milstein, Changyu Fan, Mike Tipsword, Kevin Drew, Matilde Galli, Kahn Rhrissorrakrai, David Drechsel, Daphne Koller, Frederick P. Roth, Lilia M. Iakoucheva, A. Keith Dunker, Richard Bonneau, Kristin C. Gunsalus, David E. Hill, Fabio Piano, Jan Tavernier, Sander van den Heuvel, Anthony A. Hyman, Marc Vidal

Cell. Author manuscript; available in PMC 2009 Aug 8.

Published in final edited form as: Cell. 2008 Aug 8; 134(3): 534–545. doi: 10.1016/j.cell.2008.07.009

Correction in:: volume 151 on page 1633

PMCID:: PMC2596478

Abstract Article PDF–4.0M

Select item 209674617.

The C. elegans pumilio homolog, puf-9, is required for the 3’UTR mediated repression of the let-7 microRNA target gene, hbl-1.

Mona J. Nolde, Nazli Saka, Kristy L. Reinert, Frank J. Slack

Dev Biol. Author manuscript; available in PMC 2007 Nov 28.

Published in final edited form as: Dev Biol. 2007 May 15; 305(2): 551–563. Published online 2007 Mar 3. doi: 10.1016/j.ydbio.2007.02.040

PMCID:: PMC2096746

Abstract Article PDF–2.4M

Select item 108828918.

Analysis of long-lived C. elegans daf-2 mutants using serial analysis of gene expression

Julius Halaschek-Wiener, Jaswinder S. Khattra, Sheldon McKay, Anatoli Pouzyrev, Jeff M. Stott, George S. Yang, Robert A. Holt, Steven J.M. Jones, Marco A. Marra, Angela R. Brooks-Wilson, Donald L. Riddle

Genome Res. 2005 May; 15(5): 603–615. doi: 10.1101/gr.3274805

PMCID:: PMC1088289

Abstract Article PDF–632K

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