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Select item 101057361.

Next-generation large-scale binary protein interaction network for Drosophila melanogaster

Hong-Wen Tang, Kerstin Spirohn, Yanhui Hu, Tong Hao, István A. Kovács, Yue Gao, Richard Binari, Donghui Yang-Zhou, Kenneth H. Wan, Joel S. Bader, Dawit Balcha, Wenting Bian, Benjamin W. Booth, Atina G. Coté, Steffi de Rouck, Alice Desbuleux, Kah Yong Goh, Dae-Kyum Kim, Jennifer J. Knapp, Wen Xing Lee, Irma Lemmens, Cathleen Li, Mian Li, Roujia Li, Hyobin Julianne Lim, Yifang Liu, Katja Luck, Dylan Markey, Carl Pollis, Sudharshan Rangarajan, Jonathan Rodiger, Sadie Schlabach, Yun Shen, Dayag Sheykhkarimli, Bridget TeeKing, Frederick P. Roth, Jan Tavernier, Michael A. Calderwood, David E. Hill, Susan E. Celniker, Marc Vidal, Norbert Perrimon, Stephanie E. Mohr

Nat Commun. 2023; 14: 2162. Published online 2023 Apr 15. doi: 10.1038/s41467-023-37876-0

PMCID:: PMC10105736

Abstract Article PDF–3.2M

Select item 92321612.

Single-nucleus RNA-sequencing in pre-cellularization Drosophila melanogaster embryos

Ashley R. Albright, Michael R. Stadler, Michael B. Eisen

PLoS One. 2022; 17(6): e0270471. Published online 2022 Jun 24. doi: 10.1371/journal.pone.0270471

PMCID:: PMC9232161

Abstract Article PDF–1.7M

Select item 79715493.

Natural variation in the regulation of neurodevelopmental genes modifies flight performance in Drosophila

Adam N. Spierer, Jim A. Mossman, Samuel Pattillo Smith, Lorin Crawford, Sohini Ramachandran, David M. Rand

PLoS Genet. 2021 Mar; 17(3): e1008887. Published online 2021 Mar 18. doi: 10.1371/journal.pgen.1008887

PMCID:: PMC7971549

Abstract Article PDF–2.3M

Select item 73945484.

Homeostatic plasticity fails at the intersection of autism-gene mutations and a novel class of common genetic modifiers

Özgür Genç, Joon-Yong An, Richard D Fetter, Yelena Kulik, Giulia Zunino, Stephan J Sanders, Graeme W Davis

eLife. 2020; 9: e55775. Published online 2020 Jul 1. doi: 10.7554/eLife.55775

PMCID:: PMC7394548

Abstract Article PDF–5.8M

Select item 69834505.

A cell atlas of the adult Drosophila midgut

Ruei-Jiun Hung, Yanhui Hu, Rory Kirchner, Yifang Liu, Chiwei Xu, Aram Comjean, Sudhir Gopal Tattikota, Fangge Li, Wei Song, Shannan Ho Sui, Norbert Perrimon

Proc Natl Acad Sci U S A. 2020 Jan 21; 117(3): 1514–1523. Published online 2020 Jan 8. doi: 10.1073/pnas.1916820117

PMCID:: PMC6983450

Abstract Article PDF–11M

Select item 69615786.

CRISPR-based modular assembly of a UAS-cDNA/ORF plasmid library for more than 5500 Drosophila genes conserved in humans

Ping Wei, Wen Xue, Yun Zhao, Guang Ning, Jiwu Wang

Genome Res. 2020 Jan; 30(1): 95–106. doi: 10.1101/gr.250811.119

PMCID:: PMC6961578

Abstract Article PDF–3.6M

Select item 57078057.

Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species

Piero Sanfilippo, Jiayu Wen, Eric C. Lai

Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0

PMCID:: PMC5707805

Abstract Article PDF–3.2M

Select item 56890028.

Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster

Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira

RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117

PMCID:: PMC5689002

Abstract Article PDF–4.0M

Select item 53120049.

Seizure control through genetic and pharmacological manipulation of Pumilio in Drosophila: a key component of neuronal homeostasis

Wei-Hsiang Lin, Carlo N. G. Giachello, Richard A. Baines

Dis Model Mech. 2017 Feb 1; 10(2): 141–150. doi: 10.1242/dmm.027045

PMCID:: PMC5312004

Abstract Article

Select item 456802510.

Genes conserved in bilaterians but jointly lost with Myc during nematode evolution are enriched in cell proliferation and cell migration functions

Albert J. Erives

Dev Genes Evol. 2015; 225(5): 259–273. Published online 2015 Jul 15. doi: 10.1007/s00427-015-0508-1

PMCID:: PMC4568025

Abstract Article PDF–2.8M

Select item 452833011.

Gene Model Annotations for Drosophila melanogaster: The Rule-Benders

Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium

G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937

PMCID:: PMC4528330

Abstract Article PDF–2.2M

Select item 452832912.

Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data

Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium

G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929

PMCID:: PMC4528329

Abstract Article PDF–4.9M

Select item 435288713.

The Release 6 reference sequence of the Drosophila melanogaster genome

Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker

Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114

PMCID:: PMC4352887

Abstract Article PDF–1022K

Select item 433166214.

Drosophila melanogaster cellular repressor of E1A-stimulated genes is a lysosomal protein essential for fly development

Elisabeth Kowalewski-Nimmerfall, Philipp Schähs, Daniel Maresch, Dubravko Rendic, Helmut Krämer, Lukas Mach

Biochim Biophys Acta Mol Cell Res. 2014 Dec; 1843(12): 2900–2912. doi: 10.1016/j.bbamcr.2014.08.012

PMCID:: PMC4331662

Abstract Article

Select item 427152715.

Phylostratigraphic Bias Creates Spurious Patterns of Genome Evolution

Bryan A. Moyers, Jianzhi Zhang

Mol Biol Evol. 2015 Jan 1; 32(1): 258–267. Published online 2014 Oct 13. doi: 10.1093/molbev/msu286

Correction in:: Mol Biol Evol. 2016 Nov; 33(11): 3031.

PMCID:: PMC4271527

Abstract Article PDF–618K

Select item 383227416.

Evidence for Tissue-Specific JAK/STAT Target Genes in Drosophila Optic Lobe Development

Hongbin Wang, Xi Chen, Teng He, Yanna Zhou, Hong Luo

Genetics. 2013 Dec; 195(4): 1291–1306. Published online 2013 Sep 27. doi: 10.1534/genetics.113.155945

PMCID:: PMC3832274

Abstract Article PDF–6.2M

Select item 355678717.

Identification and Characterization of a Juvenile Hormone Response Element and Its Binding Proteins

Yiping Li, Zhaolin Zhang, Gene E. Robinson, Subba R. Palli

J Biol Chem. Author manuscript; available in PMC 2013 Jan 28.

Published in final edited form as: J Biol Chem. 2007 Dec 28; 282(52): 37605–37617. Published online 2007 Oct 22. doi: 10.1074/jbc.M704595200

PMCID:: PMC3556787

Abstract Article PDF–2.2M

Select item 353564818.

DNA regions bound at low occupancy by transcription factors do not drive patterned reporter gene expression in Drosophila

William W. Fisher, Jingyi Jessica Li, Ann S. Hammonds, James B. Brown, Barret D. Pfeiffer, Richard Weiszmann, Stewart MacArthur, Sean Thomas, John A. Stamatoyannopoulos, Michael B. Eisen, Peter J. Bickel, Mark D. Biggin, Susan E. Celniker

Proc Natl Acad Sci U S A. 2012 Dec 26; 109(52): 21330–21335. Published online 2012 Dec 10. doi: 10.1073/pnas.1209589110

PMCID:: PMC3535648

Abstract Article PDF–344K

Select item 353067719.

High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression

Philippe Batut, Alexander Dobin, Charles Plessy, Piero Carninci, Thomas R. Gingeras

Genome Res. 2013 Jan; 23(1): 169–180. doi: 10.1101/gr.139618.112

PMCID:: PMC3530677

Abstract Article PDF–1.5M

Select item 346946720.

The Many Landscapes of Recombination in Drosophila melanogaster

Josep M. Comeron, Ramesh Ratnappan, Samuel Bailin

PLoS Genet. 2012 Oct; 8(10): e1002905. Published online 2012 Oct 11. doi: 10.1371/journal.pgen.1002905

PMCID:: PMC3469467

Abstract Article PDF–1.6M

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