PMC Links for GEO Profiles (Select 52796522) - PMC

Thomas Bourquard, Kwanghyuk Lee, Ismael Al-Ramahi, Minh Pham, Dillon Shapiro, Yashwanth Lagisetty, Shirin Soleimani, Samantha Mota, Kevin Wilhelm, Maryam Samieinasab, Young Won Kim, Eunna Huh, Jennifer Asmussen, Panagiotis Katsonis, Juan Botas, Olivier Lichtarge

Nat Commun. 2023; 14: 2765. Published online 2023 May 13. doi: 10.1038/s41467-023-38374-z

PMCID:: PMC10183026

Abstract Article PDF–2.2M

Select item 78123804.

B.2.16 is a non-lethal modifier of the Dark⁸² mosaic eye phenotype in Drosophila melanogaster

Alysia D Vrailas-Mortimer, Nitish Aggarwal, Neha N Ahmed, Ian M Alberts, Masa Alhawasli, Ibrahim A Aljerdi, Brooke M Allen, Ahmad M Alnajar, Michael A Anderson, Ryan Armstong, Chace C Avery, Eric J Avila, Tyra N Baker, Soolmaz Basardeh, Natasha A Bates, Farrah N Beidas, Ashton C Bosler, Deja M Brewer, Ryan S Buenaventura, Natalie JL Burrell, Alyn P Cabrera-Lopez, Amairani B Cervantes-Gonzalez, Raymond P Cezar, Joselyn Coronel, Corinne Croslyn, Konnor R Damery, Lucero Diaz-Alavez, Nupur P Dixit, Dilcia L Duarte, Amanda R Emke, Katherine English, Audrey A Eshun, Samuel R Esterly, Arnold J Estrada, Mark Feng, Meghan M Freund, Niko Garcia, Charandeep S Ghotra, Haddia Ghyasi, Christa SA Hale, Luci Hulsman, Lindsey Jamerson, Austin K Jones, Madeline Kuczynski, Takailah N Lacey-Kennedy, Mindy J Lee, Tala Mahjoub, Molly C Mersinger, Alyssa D Muckerheide, David W Myers, Karen Nielsen, Paul J Nosowicz, Jacinda A Nunez, Amy C Ortiz, Tulsi T Patel, Natalie N Perry, W Storm A Poser, Deisy M Puga, Cathrine Quam, Paulina Quintana-Lopez, Piper Rennerfeldt, Nicholas M Reyes, Ian G Rines, Cally Roberts, Daniel B Robinson, Kalina M Rossa, Gloria J Ruhlmann, Jeremy Schmidt, John R Sherwood, Dimyana H Shonoda, Hannah Soellner, Juan C Torrez, Mayukah Velide, Zachary Weinzapfel, Alisa C Ward, Kayla L Bieser, Julie A Merkle, Joyce C Stamm, Richard L Tillett, Jacob D Kagey

MicroPubl Biol. 2021; 2021: 10.17912/micropub.biology.000359. Published online 2021 Jan 18. doi: 10.17912/micropub.biology.000359

PMCID:: PMC7812380

Abstract Article PDF–1.9M

Select item 66596965.

Extracellular matrix stiffness cues junctional remodeling for 3D tissue elongation

Dong-Yuan Chen, Justin Crest, Sebastian J. Streichan, David Bilder

Nat Commun. 2019; 10: 3339. Published online 2019 Jul 26. doi: 10.1038/s41467-019-10874-x

PMCID:: PMC6659696

Abstract Article PDF–8.0M

Select item 62333236.

Integration of Drosophila and Human Genetics to understand Notch signaling related diseases

Jose L. Salazar, Shinya Yamamoto

Adv Exp Med Biol. Author manuscript; available in PMC 2018 Nov 13.

Published in final edited form as: Adv Exp Med Biol. 2018; 1066: 141–185. doi: 10.1007/978-3-319-89512-3_8

PMCID:: PMC6233323

Abstract Article PDF–2.0M

Select item 59064497.

The impact of genome variation and diet on the metabolic phenotype and microbiome composition of Drosophila melanogaster

Lisa Jehrke, Fiona A. Stewart, Andrea Droste, Mathias Beller

Sci Rep. 2018; 8: 6215. Published online 2018 Apr 18. doi: 10.1038/s41598-018-24542-5

PMCID:: PMC5906449

Abstract Article PDF–4.5M

Select item 57078058.

Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species

Piero Sanfilippo, Jiayu Wen, Eric C. Lai

Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0

PMCID:: PMC5707805

Abstract Article PDF–3.2M

Select item 56890029.

Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster

Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira

RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117

PMCID:: PMC5689002

Abstract Article PDF–4.0M

Select item 564546510.

Population genomics of Wolbachia and mtDNA in Drosophila simulans from California

Sarah Signor

Sci Rep. 2017; 7: 13369. Published online 2017 Oct 17. doi: 10.1038/s41598-017-13901-3

PMCID:: PMC5645465

Abstract Article PDF–2.1M

Select item 550350911.

Organ sculpting by patterned extracellular matrix stiffness

Justin Crest, Alba Diz-Muñoz, Dong-Yuan Chen, Daniel A Fletcher, David Bilder

eLife. 2017; 6: e24958. Published online 2017 Jun 27. doi: 10.7554/eLife.24958

PMCID:: PMC5503509

Abstract Article PDF–3.9M

Select item 494285212.

Rab10-mediated secretion synergizes with tissue movement to build a polarized basement membrane architecture for organ morphogenesis

Adam J. Isabella, Sally Horne-Badovinac

Dev Cell. Author manuscript; available in PMC 2017 Jul 11.

Published in final edited form as: Dev Cell. 2016 Jul 11; 38(1): 47–60. doi: 10.1016/j.devcel.2016.06.009

PMCID:: PMC4942852

Abstract Article PDF–4.1M

Select item 473800513.

Proteome-wide dataset supporting the study of ancient metazoan macromolecular complexes

Sadhna Phanse, Cuihong Wan, Blake Borgeson, Fan Tu, Kevin Drew, Greg Clark, Xuejian Xiong, Olga Kagan, Julian Kwan, Alexandr Bezginov, Kyle Chessman, Swati Pal, Graham Cromar, Ophelia Papoulas, Zuyao Ni, Daniel R. Boutz, Snejana Stoilova, Pierre C. Havugimana, Xinghua Guo, Ramy H. Malty, Mihail Sarov, Jack Greenblatt, Mohan Babu, W. Brent Derry, Elisabeth R. Tillier, John B. Wallingford, John Parkinson, Edward M. Marcotte, Andrew Emili

Data Brief. 2016 Mar; 6: 715–721. Published online 2015 Dec 12. doi: 10.1016/j.dib.2015.11.062

PMCID:: PMC4738005

Abstract Article PDF–205K

Select item 457069714.

Putative synaptic genes defined from a Drosophila whole body developmental transcriptome by a machine learning approach

Flavio Pazos Obregón, Cecilia Papalardo, Sebastián Castro, Gustavo Guerberoff, Rafael Cantera

BMC Genomics. 2015; 16(1): 694. Published online 2015 Sep 15. doi: 10.1186/s12864-015-1888-3

PMCID:: PMC4570697

Abstract Article PDF–2.0M

Select item 456802515.

Genes conserved in bilaterians but jointly lost with Myc during nematode evolution are enriched in cell proliferation and cell migration functions

Albert J. Erives

Dev Genes Evol. 2015; 225(5): 259–273. Published online 2015 Jul 15. doi: 10.1007/s00427-015-0508-1

PMCID:: PMC4568025

Abstract Article PDF–2.8M

Select item 452833016.

Gene Model Annotations for Drosophila melanogaster: The Rule-Benders

Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium

G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937

PMCID:: PMC4528330

Abstract Article PDF–2.2M

Select item 452832917.

Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data

Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium

G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929

PMCID:: PMC4528329

Abstract Article PDF–4.9M

Select item 439155518.

Identification of Genes That Promote or Inhibit Olfactory Memory Formation in Drosophila

Erica Walkinshaw, Yunchao Gai, Caitlin Farkas, Daniel Richter, Eric Nicholas, Krystyna Keleman, Ronald L. Davis

Genetics. 2015 Apr; 199(4): 1173–1182. Published online 2015 Feb 2. doi: 10.1534/genetics.114.173575

PMCID:: PMC4391555

Abstract Article PDF–1.1M

Select item 435288719.

The Release 6 reference sequence of the Drosophila melanogaster genome

Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker

Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114

PMCID:: PMC4352887

Abstract Article PDF–1022K

Select item 427152720.

Phylostratigraphic Bias Creates Spurious Patterns of Genome Evolution

Bryan A. Moyers, Jianzhi Zhang

Mol Biol Evol. 2015 Jan 1; 32(1): 258–267. Published online 2014 Oct 13. doi: 10.1093/molbev/msu286

Correction in:: Mol Biol Evol. 2016 Nov; 33(11): 3031.

PMCID:: PMC4271527

Abstract Article PDF–618K

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