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Items: 19

1.
Genetic determinants of micronucleus formation in vivo
D. J. Adams, B. Barlas, R. E. McIntyre, I. Salguero, L. van der Weyden, A. Barros, J. R. Vicente, N. Karimpour, A. Haider, M. Ranzani, G. Turner, N. A. Thompson, V. Harle, R. Olvera-León, C. D. Robles-Espinoza, A. O. Speak, N. Geisler, W. J. Weninger, S. H. Geyer, J. Hewinson, N. A. Karp, The Sanger Mouse Genetics Project, B. Fu, F. Yang, Z. Kozik, J. Choudhary, L. Yu, M. S. van Ruiten, B. D. Rowland, C. J. Lelliott, M. del Castillo Velasco-Herrera, R. Verstraten, L. Bruckner, A. G. Henssen, M. A. Rooimans, J. de Lange, T. J. Mohun, M. J. Arends, K. A. Kentistou, P. A. Coelho, Y. Zhao, H. Zecchini, J. R. B. Perry, S. P. Jackson, G. Balmus
Nature. 2024; 627(8002): 130–136. Published online 2024 Feb 14. doi: 10.1038/s41586-023-07009-0
PMCID:
PMC10917660
AbstractArticlePDF–4.8M
2.
APE2 promotes AID-dependent Somatic Hypermutation in primary B cell cultures that is suppressed by APE1
Carol E. Schrader, Travis Williams, Klaus Pechhold, Erin K. Linehan, Daisuke Tsuchimoto, Yusaku Nakabeppu
J Immunol. Author manuscript; available in PMC 2024 Jun 1.
Published in final edited form as: J Immunol. 2023 Jun 1; 210(11): 1804–1814. doi: 10.4049/jimmunol.2100946
PMCID:
PMC10234595
AbstractArticlePDF–1.3M
3.
Subcellular proteomics of dopamine neurons in the mouse brain
Benjamin D Hobson, Se Joon Choi, Eugene V Mosharov, Rajesh K Soni, David Sulzer, Peter A Sims
eLife. 2022; 11: e70921. Published online 2022 Jan 31. doi: 10.7554/eLife.70921
PMCID:
PMC8860448
AbstractArticlePDF–15M
4.
BraInMap elucidates the macromolecular connectivity landscape of mammalian brain
Reza Pourhaghighi, Peter E. A. Ash, Sadhna Phanse, Florian Goebels, Lucas Z. M. Hu, Siwei Chen, Yingying Zhang, Shayne D. Wierbowski, Samantha Boudeau, Mohamed T. Moutaoufik, Ramy H. Malty, Edyta Malolepsza, Kalliopi Tsafou, Aparna Nathan, Graham Cromar, Hongbo Guo, Ali Al Abdullatif, Daniel J. Apicco, Lindsay A. Becker, Aaron D. Gitler, Stefan M. Pulst, Ahmed Youssef, Ryan Hekman, Pierre C. Havugimana, Carl A. White, Benjamin C. Blum, Antonia Ratti, Camron D. Bryant, John Parkinson, Kasper Lage, Mohan Babu, Haiyuan Yu, Gary D. Bader, Benjamin Wolozin, Andrew Emili
Cell Syst. Author manuscript; available in PMC 2021 Apr 22.
Published in final edited form as: Cell Syst. 2020 Apr 22; 10(4): 333–350.e14. doi: 10.1016/j.cels.2020.03.003
Correction in:
Cell Syst. 2020 Aug 26; 11(2): 208.
PMCID:
PMC7938770
AbstractArticlePDF–2.0M
5.
The DNA Repair Enzyme Apurinic/Apyrimidinic Endonuclease (Apex Nuclease) 2 Has the Potential to Protect against Down-Regulation of Chondrocyte Activity in Osteoarthritis
Naoko Yui, Hirotaka Yoshioka, Hiroto Fujiya, Haruki Musha, Moroe Beppu, Rie Karasawa, Kazuo Yudoh
Int J Mol Sci. 2014 Sep; 15(9): 14921–14934. Published online 2014 Aug 25. doi: 10.3390/ijms150914921
PMCID:
PMC4200784
AbstractArticlePDF–6.2M
6.
AP endonuclease 2 regulates the expansion of germinal centers by protecting against AID-independent DNA damage in B cells
Jeroen E.J. Guikema, Erin K. Linehan, Nada Esa, Daisuke Tsuchimoto, Yusaku Nakabeppu, Robert T. Woodland, Carol E. Schrader
J Immunol. Author manuscript; available in PMC 2015 Jul 15.
Published in final edited form as: J Immunol. 2014 Jul 15; 193(2): 931–939. Published online 2014 Jun 16. doi: 10.4049/jimmunol.1400002
PMCID:
PMC4105697
AbstractArticlePDF–1.7M
7.
Differential expression of APE1 and APE2 in germinal centers promotes error-prone repair and A:T mutations during somatic hypermutation
Janet Stavnezer, Erin K. Linehan, Mikayla R. Thompson, Ghaith Habboub, Anna J. Ucher, Tatenda Kadungure, Daisuke Tsuchimoto, Yusaku Nakabeppu, Carol E. Schrader
Proc Natl Acad Sci U S A. 2014 Jun 24; 111(25): 9217–9222. Published online 2014 Jun 9. doi: 10.1073/pnas.1405590111
PMCID:
PMC4078814
AbstractArticlePDF–796K
8.
AP-Endonuclease 2 is necessary for normal B cell development and recovery of lymphoid progenitors after chemotherapeutic challenge
Jeroen E.J. Guikema, Rachel M. Gerstein, Erin K. Linehan, Erin K. Cloherty, Eric Evan-Browning, Daisuke Tsuchimoto, Yusaku Nakabeppu, Carol E. Schrader
J Immunol. Author manuscript; available in PMC 2014 Jun 2.
Published in final edited form as: J Immunol. 2011 Feb 15; 186(4): 1943–1950. Published online 2011 Jan 12. doi: 10.4049/jimmunol.1002422
PMCID:
PMC4041036
AbstractArticlePDF–747K
9.
A DNA break– and phosphorylation-dependent positive feedback loop promotes immunoglobulin class-switch recombination
Bao Q Vuong, Kayleigh Herrick-Reynolds, Bharat Vaidyanathan, Joseph N Pucella, Anna J Ucher, Nina M Donghia, Xiwen Gu, Laura Nicolas, Urszula Nowak, Numa Rahman, Matthew P Strout, Kevin D Mills, Janet Stavnezer, Jayanta Chaudhuri
Nat Immunol. Author manuscript; available in PMC 2014 Apr 30.
Published in final edited form as: Nat Immunol. 2013 Nov; 14(11): 1183–1189. Published online 2013 Oct 6. doi: 10.1038/ni.2732
PMCID:
PMC4005274
AbstractArticlePDF–989K
10.
Apurinic/Apyrimidinic Endonuclease 1 Is the Essential Nuclease during Immunoglobulin Class Switch Recombination
Shahnaz Masani, Li Han, Kefei Yu
Mol Cell Biol. 2013 Apr; 33(7): 1468–1473. doi: 10.1128/MCB.00026-13
PMCID:
PMC3624277
AbstractArticlePDF–1.0M
11.
A conditional knockout resource for the genome–wide study of mouse gene function
William C. Skarnes, Barry Rosen, Anthony P. West, Manousos Koutsourakis, Wendy Bushell, Vivek Iyer, Alejandro O. Mujica, Mark Thomas, Jennifer Harrow, Tony Cox, David Jackson, Jessica Severin, Patrick Biggs, Jun Fu, Michael Nefedov, Pieter J. de Jong, A. Francis Stewart, Allan Bradley
Nature. Author manuscript; available in PMC 2013 Feb 14.
Published in final edited form as: Nature. 2011 Jun 15; 474(7351): 337–342. Published online 2011 Jun 15. doi: 10.1038/nature10163
PMCID:
PMC3572410
AbstractArticlePDF–1.1M
12.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
PMCID:
PMC3178059
AbstractArticlePDF–1.0M
13.
A novel regulatory circuit in base excision repair involving AP endonuclease 1, Creb1 and DNA polymerase β
De-Sheng Pei, Xiao-Jie Yang, Wei Liu, Jeroen E. J. Guikema, Carol E. Schrader, Phyllis R. Strauss
Nucleic Acids Res. 2011 Apr; 39(8): 3156–3165. Published online 2010 Dec 20. doi: 10.1093/nar/gkq1142
PMCID:
PMC3082881
AbstractArticlePDF–4.4M
14.
A mitochondrial protein compendium elucidates complex I disease biology
David J. Pagliarini, Sarah E. Calvo, Betty Chang, Sunil A. Sheth, Scott B. Vafai, Shao-En Ong, Geoffrey A. Walford, Canny Sugiana, Avihu Boneh, William K. Chen, David E. Hill, Marc Vidal, James G. Evans, David R. Thorburn, Steven A. Carr, Vamsi K. Mootha
Cell. Author manuscript; available in PMC 2009 Nov 18.
Published in final edited form as: Cell. 2008 Jul 11; 134(1): 112–123. doi: 10.1016/j.cell.2008.06.016
PMCID:
PMC2778844
AbstractArticlePDF–1.2M
15.
APE1- and APE2-dependent DNA breaks in immunoglobulin class switch recombination
Jeroen E.J. Guikema, Erin K. Linehan, Daisuke Tsuchimoto, Yusaku Nakabeppu, Phyllis R. Strauss, Janet Stavnezer, Carol E. Schrader
J Exp Med. 2007 Nov 26; 204(12): 3017–3026. doi: 10.1084/jem.20071289
Correction in:
J Exp Med. 2007 Dec 24; 204(13): 3295.
PMCID:
PMC2118529
AbstractArticlePDF–3.3M
16.
The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)
Genome Res. 2004 Oct; 14(10b): 2121–2127. doi: 10.1101/gr.2596504
Correction in:
Genome Res. 2006 Jun; 16(6): 804.
PMCID:
PMC528928
AbstractArticlePDF–140K
17.
RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer
Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki
Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600
PMCID:
PMC310992
AbstractArticlePDF–3.4M
18.
Normalization and Subtraction of Cap-Trapper-Selected cDNAs to Prepare Full-Length cDNA Libraries for Rapid Discovery of New Genes
Piero Carninci, Yuko Shibata, Norihito Hayatsu, Yuichi Sugahara, Kazuhiro Shibata, Masayoshi Itoh, Hideaki Konno, Yasushi Okazaki, Masami Muramatsu, Yoshihide Hayashizaki
Genome Res. 2000 Oct; 10(10): 1617–1630. doi: 10.1101/gr.145100
PMCID:
PMC310980
AbstractArticlePDF–1.4M
19.
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences
Mammalian Gene Collection (MGC) Program Team
Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899
PMCID:
PMC139241
AbstractArticlePDF–118K

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