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Items: 1 to 20 of 35

1.
Dual Proteome-scale Networks Reveal Cell-specific Remodeling of the Human Interactome
Edward L. Huttlin, Raphael J. Bruckner, Jose Navarrete-Perea, Joe R. Cannon, Kurt Baltier, Fana Gebreab, Melanie P. Gygi, Alexandra Thornock, Gabriela Zarraga, Stanley Tam, John Szpyt, Brandon M. Gassaway, Alexandra Panov, Hannah Parzen, Sipei Fu, Arvene Golbazi, Eila Maenpaa, Keegan Stricker, Sanjukta Guha Thakurta, Tian Zhang, Ramin Rad, Joshua Pan, David P. Nusinow, Joao A. Paulo, Devin K. Schweppe, Laura Pontano Vaites, J. Wade Harper, Steven P. Gygi
Cell. Author manuscript; available in PMC 2022 May 27.
Published in final edited form as: Cell. 2021 May 27; 184(11): 3022–3040.e28. Published online 2021 May 6. doi: 10.1016/j.cell.2021.04.011
PMCID:
PMC8165030
AbstractArticlePDF–2.2M
2.
A reference map of the human binary protein interactome
Katja Luck, Dae-Kyum Kim, Luke Lambourne, Kerstin Spirohn, Bridget E. Begg, Wenting Bian, Ruth Brignall, Tiziana Cafarelli, Francisco J. Campos-Laborie, Benoit Charloteaux, Dongsic Choi, Atina G. Coté, Meaghan Daley, Steven Deimling, Alice Desbuleux, Amélie Dricot, Marinella Gebbia, Madeleine F. Hardy, Nishka Kishore, Jennifer J. Knapp, István A. Kovács, Irma Lemmens, Miles W. Mee, Joseph C. Mellor, Carl Pollis, Carles Pons, Aaron D. Richardson, Sadie Schlabach, Bridget Teeking, Anupama Yadav, Mariana Babor, Dawit Balcha, Omer Basha, Christian Bowman-Colin, Suet-Feung Chin, Soon Gang Choi, Claudia Colabella, Georges Coppin, Cassandra D’Amata, David De Ridder, Steffi De Rouck, Miquel Duran-Frigola, Hanane Ennajdaoui, Florian Goebels, Liana Goehring, Anjali Gopal, Ghazal Haddad, Elodie Hatchi, Mohamed Helmy, Yves Jacob, Yoseph Kassa, Serena Landini, Roujia Li, Natascha van Lieshout, Andrew MacWilliams, Dylan Markey, Joseph N. Paulson, Sudharshan Rangarajan, John Rasla, Ashyad Rayhan, Thomas Rolland, Adriana San-Miguel, Yun Shen, Dayag Sheykhkarimli, Gloria M. Sheynkman, Eyal Simonovsky, Murat Taşan, Alexander Tejeda, Vincent Tropepe, Jean-Claude Twizere, Yang Wang, Robert J. Weatheritt, Jochen Weile, Yu Xia, Xinping Yang, Esti Yeger-Lotem, Quan Zhong, Patrick Aloy, Gary D. Bader, Javier De Las Rivas, Suzanne Gaudet, Tong Hao, Janusz Rak, Jan Tavernier, David E. Hill, Marc Vidal, Frederick P. Roth, Michael A. Calderwood
Nature. Author manuscript; available in PMC 2020 Oct 8.
Published in final edited form as: Nature. 2020 Apr; 580(7803): 402–408. Published online 2020 Apr 8. doi: 10.1038/s41586-020-2188-x
PMCID:
PMC7169983
AbstractArticlePDF–5.4M
3.
HIV-1 Gag-Virus-Like Particles Inhibit HIV-1 Replication in Dendritic Cells and T Cells through IFN-α-Dependent Upregulation of APOBEC3G and 3F
Myint Oo Chang, Tomoyuki Suzuki, Norio Yamamoto, Megumi Watanabe, Hiroshi Takaku
J Innate Immun. 2012 Aug; 4(5-6): 579–590. Published online 2012 Jun 26. doi: 10.1159/000339402
PMCID:
PMC6741551
AbstractArticlePDF–1.1M
4.
Decoding type I and III interferon signalling during viral infection
Emily V. Mesev, Robert A. LeDesma, Alexander Ploss
Nat Microbiol. 2019; 4(6): 914–924. Published online 2019 Apr 1. doi: 10.1038/s41564-019-0421-x
PMCID:
PMC6554024
AbstractArticlePDF–1.4M
5.
Architecture of the human interactome defines protein communities and disease networks
Edward L. Huttlin, Raphael J. Bruckner, Joao A. Paulo, Joe R. Cannon, Lily Ting, Kurt Baltier, Greg Colby, Fana Gebreab, Melanie P. Gygi, Hannah Parzen, John Szpyt, Stanley Tam, Gabriela Zarraga, Laura Pontano-Vaites, Sharan Swarup, Anne E. White, Devin K. Schweppe, Ramin Rad, Brian K. Erickson, Robert A. Obar, K.G. Guruharsha, Kejie Li, Spyros Artavanis-Tsakonas, Steven P. Gygi, J. Wade Harper
Nature. Author manuscript; available in PMC 2017 Nov 17.
Published in final edited form as: Nature. 2017 May 25; 545(7655): 505–509. Published online 2017 May 17. doi: 10.1038/nature22366
PMCID:
PMC5531611
AbstractArticlePDF–2.7M
6.
Gene therapy with plasmids encoding IFN-β or IFN-α14 confers long-term resistance to HIV-1 in humanized mice
Sojan Abraham, Jang-Gi Choi, Nora M. Ortega, Junli Zhang, Premlata Shankar, N. Manjunath Swamy
Oncotarget. 2016 Nov 29; 7(48): 78412–78420. Published online 2016 Oct 6. doi: 10.18632/oncotarget.12512
PMCID:
PMC5346649
AbstractArticlePDF–1.4M
7.
The BioPlex Network: A Systematic Exploration of the Human Interactome
Edward L. Huttlin, Lily Ting, Raphael J. Bruckner, Fana Gebreab, Melanie P. Gygi, John Szpyt, Stanley Tam, Gabriela Zarraga, Greg Colby, Kurt Baltier, Rui Dong, Virginia Guarani, Laura Pontano Vaites, Alban Ordureau, Ramin Rad, Brian K. Erickson, Martin Wühr, Joel Chick, Bo Zhai, Deepak Kolippakkam, Julian Mintseris, Robert A. Obar, Tim Harris, Spyros Artavanis-Tsakonas, Mathew E. Sowa, Pietro DeCamilli, Joao A. Paulo, J. Wade Harper, Steven P. Gygi
Cell. Author manuscript; available in PMC 2016 Jul 16.
Published in final edited form as: Cell. 2015 Jul 16; 162(2): 425–440. doi: 10.1016/j.cell.2015.06.043
PMCID:
PMC4617211
AbstractArticlePDF–2.2M
8.
HIV-1 Env and Nef Cooperatively Contribute to Plasmacytoid Dendritic Cell Activation via CD4-Dependent Mechanisms
Natalia J. Reszka-Blanco, Vijay Sivaraman, Liguo Zhang, Lishan Su
J Virol. 2015 Aug 1; 89(15): 7604–7611. Published online 2015 May 13. doi: 10.1128/JVI.00695-15
PMCID:
PMC4505645
AbstractArticlePDF–531K
9.
An Interferon-α-Induced Tethering Mechanism Inhibits HIV-1 and Ebola Virus Particle Release but Is Counteracted by the HIV-1 Vpu Protein
Stuart J.D. Neil, Virginie Sandrin, Wesley I. Sundquist, Paul D. Bieniasz
Cell Host Microbe. Author manuscript; available in PMC 2013 Oct 9.
Published in final edited form as: Cell Host Microbe. 2007 Sep 13; 2(3): 193–203. doi: 10.1016/j.chom.2007.08.001
PMCID:
PMC3793644
AbstractArticlePDF–5.4M
10.
Evidence for a Different Susceptibility of Primate Lentiviruses to Type I Interferons
Stéphanie Cordeil, Xuan-Nhi Nguyen, Gregory Berger, Stéphanie Durand, Michelle Ainouze, Andrea Cimarelli
J Virol. 2013 Mar; 87(5): 2587–2596. doi: 10.1128/JVI.02553-12
PMCID:
PMC3571359
AbstractArticlePDF–974K
11.
HIV-1 gp120 impairs the induction of B cell responses by TLR9-activated plasmacytoid dendritic cells
Nancy P.Y. Chung, Katie Matthews, Per Johan Klasse, Rogier W. Sanders, John P. Moore
J Immunol. Author manuscript; available in PMC 2013 Dec 1.
Published in final edited form as: J Immunol. 2012 Dec 1; 189(11): 5257–5265. Published online 2012 Oct 24. doi: 10.4049/jimmunol.1201905
PMCID:
PMC3504132
AbstractArticlePDF–2.3M
12.
Role of retroviral restriction factors in the interferon-α–mediated suppression of HIV-1 in vivo
Satish K. Pillai, Mohamed Abdel-Mohsen, John Guatelli, Mark Skasko, Alexander Monto, Katsuya Fujimoto, Steven Yukl, Warner C. Greene, Helen Kovari, Andri Rauch, Jacques Fellay, Manuel Battegay, Bernard Hirschel, Andrea Witteck, Enos Bernasconi, Bruno Ledergerber, Huldrych F. Günthard, Joseph K. Wong, the Swiss HIV Cohort Study, J Barth, M Battegay, E Bernasconi, J Böni, HC Bucher, C Burton-Jeangros, A Calmy, M Cavassini, C Cellerai, M Egger, L Elzi, J Fehr, J Fellay, M Flepp, P Francioli, H Furrer, CA Fux, M Gorgievski, H Günthard, D Haerry, B Hasse, HH Hirsch, B Hirschel, I Hösli, C Kahlert, L Kaiser, O Keiser, C Kind, T Klimkait, H Kovari, B Ledergerber, G Martinetti, B Martinez de Tejada, K Metzner, N Müller, D Nadal, G Pantaleo, A Rauch, S Regenass, M Rickenbach, C Rudin, P Schmid, D Schultze, F Schöni-Affolter, J Schüpbach, R Speck, P Taffé, P Tarr, A Telenti, A Trkola, P Vernazza, R Weber, S Yerly
Proc Natl Acad Sci U S A. 2012 Feb 21; 109(8): 3035–3040. Published online 2012 Feb 6. doi: 10.1073/pnas.1111573109
PMCID:
PMC3286922
AbstractArticlePDF–1007K
13.
Associations of 9p21 variants with cutaneous malignant melanoma, nevi, and pigmentation phenotypes in melanoma-prone families with and without CDKN2A mutations
Xiaohong R Yang, Xueying (Sharon) Liang, Ruth M. Pfeiffer, William Wheeler, Dennis Maeder, Laurie Burdette, Meredith Yeager, Stephen Chanock, Margaret A. Tucker, Alisa M. Goldstein
Fam Cancer. Author manuscript; available in PMC 2011 Dec 8.
Published in final edited form as: Fam Cancer. 2010 Dec; 9(4): 625–633. doi: 10.1007/s10689-010-9356-3
PMCID:
PMC3233727
AbstractArticlePDF–456K
14.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
PMCID:
PMC3178059
AbstractArticlePDF–1.0M
15.
Dengue hemorrhagic fever is associated with polymorphisms in JAK1
Luciano K Silva, Ronald E Blanton, Antonio R Parrado, Paulo S Melo, Vanessa G Morato, Eliana AG Reis, Juarez P Dias, Jesuina M Castro, Pedro FC Vasconcelos, Katrina AB Goddard, Maurício L Barreto, Mitermayer G Reis, M Glória Teixeira
Eur J Hum Genet. 2010 Nov; 18(11): 1221–1227. Published online 2010 Jun 30. doi: 10.1038/ejhg.2010.98
PMCID:
PMC2950898
AbstractArticlePDF–446K
16.
Interactions of host APOBEC3 restriction factors with HIV-1 in vivo: implications for therapeutics
John S. Albin, Reuben S. Harris
Expert Rev Mol Med. Author manuscript; available in PMC 2010 Apr 28.
Published in final edited form as: Expert Rev Mol Med. 2010 Jan 22; 12: e4. Published online 2010 Jan 22. doi: 10.1017/S1462399409001343
PMCID:
PMC2860793
AbstractArticlePDF–1.4M
17.
Large-Scale candidate gene analysis of spontaneous hepatitis C virus clearance
Timothy L Mosbruger, Priya Duggal, James J. Goedert, Gregory D Kirk, W. Keith Hoots, Leslie H Tobler, Michael Busch, Marion G. Peters, Hugo R Rosen, David L Thomas, Chloe L Thio
J Infect Dis. Author manuscript; available in PMC 2011 May 1.
Published in final edited form as: J Infect Dis. 2010 May 1; 201(9): 1371–1380. doi: 10.1086/651606
PMCID:
PMC2853721
AbstractArticlePDF–159K
18.
Partial Inhibition of Human Immunodeficiency Virus Replication by Type I Interferons: Impact of Cell-to-Cell Viral Transfer
Daniela Vendrame, Marion Sourisseau, Virginie Perrin, Olivier Schwartz, Fabrizio Mammano
J Virol. 2009 Oct; 83(20): 10527–10537. Published online 2009 Aug 12. doi: 10.1128/JVI.01235-09
PMCID:
PMC2753145
AbstractArticlePDF–3.1M
19.
Double-Stranded RNA Analog Poly(I:C) Inhibits Human Immunodeficiency Virus Amplification in Dendritic Cells via Type I Interferon-Mediated Activation of APOBEC3G
Susanna Trapp, Nina R. Derby, Rachel Singer, Andrew Shaw, Vennansha G. Williams, Stuart G. Turville, Julian W. Bess, Jr., Jeffrey D. Lifson, Melissa Robbiani
J Virol. 2009 Jan; 83(2): 884–895. Published online 2008 Nov 12. doi: 10.1128/JVI.00023-08
PMCID:
PMC2612396
AbstractArticlePDF–1.1M
20.
Sialoadhesin Expressed on IFN-Induced Monocytes Binds HIV-1 and Enhances Infectivity
Hans Rempel, Cyrus Calosing, Bing Sun, Lynn Pulliam
PLoS One. 2008; 3(4): e1967. Published online 2008 Apr 16. doi: 10.1371/journal.pone.0001967
PMCID:
PMC2288672
AbstractArticlePDF–379K

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