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Items: 1 to 20 of 34

1.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
2.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
3.
The peroxisomal exportomer directly inhibits phosphoactivation of the pexophagy receptor Atg36 to suppress pexophagy in yeast
Houqing Yu, Roarke A Kamber, Vladimir Denic
eLife. 2022; 11: e74531. Published online 2022 Apr 11. doi: 10.7554/eLife.74531
PMCID:
PMC9000956
AbstractArticlePDF–1.0M
4.
Membrane Lipid Requirements of the Lysine Transporter Lyp1 from Saccharomyces cerevisiae
Joury S. van ’t Klooster, Tan-Yun Cheng, Hendrik R. Sikkema, Aike Jeucken, D. Branch Moody, Bert Poolman
J Mol Biol. Author manuscript; available in PMC 2021 Mar 29.
Published in final edited form as: J Mol Biol. 2020 Jun 26; 432(14): 4023–4031. Published online 2020 May 13. doi: 10.1016/j.jmb.2020.04.029
PMCID:
PMC8005870
AbstractArticlePDF–945K
5.
Growth Inhibition by Amino Acids in Saccharomyces cerevisiae
Stephanie J. Ruiz, Joury S. van ’t Klooster, Frans Bianchi, Bert Poolman
Microorganisms. 2021 Jan; 9(1): 7. Published online 2020 Dec 22. doi: 10.3390/microorganisms9010007
PMCID:
PMC7822121
AbstractArticlePDF–1.4M
6.
Extracellular loops matter – subcellular location and function of the lysine transporter Lyp1 from Saccharomyces cerevisiae
Joury S. van‘t Klooster, Frans Bianchi, Ruben B. Doorn, Mirco Lorenzon, Jarnick H. Lusseveld, Christiaan M. Punter, Bert Poolman
FEBS J. 2020 Oct; 287(20): 4401–4414. Published online 2020 Mar 11. doi: 10.1111/febs.15262
PMCID:
PMC7687128
AbstractArticlePDF–1.6M
7.
The yeast FIT2 homologs are necessary to maintain cellular proteostasis and membrane lipid homeostasis
Wei Sheng Yap, Peter Shyu, Jr, Maria Laura Gaspar, Stephen A. Jesch, Charlie Marvalim, William A. Prinz, Susan A. Henry, Guillaume Thibault
J Cell Sci. 2020 Nov 1; 133(21): jcs248526. Published online 2020 Nov 5. doi: 10.1242/jcs.248526
PMCID:
PMC7657468
AbstractArticle
8.
Pex35 is a regulator of peroxisome abundance
Ido Yofe, Kareem Soliman, Silvia G. Chuartzman, Bruce Morgan, Uri Weill, Eden Yifrach, Tobias P. Dick, Sara J. Cooper, Christer S. Ejsing, Maya Schuldiner, Einat Zalckvar, Sven Thoms
J Cell Sci. Author manuscript; available in PMC 2021 Jul 24.
Published in final edited form as: J Cell Sci. 2017 Feb 15; 130(4): 791–804. Published online 2017 Jan 3. doi: 10.1242/jcs.187914
PMCID:
PMC7611368
AbstractArticlePDF–2.3M
9.
Complementary α-arrestin-ubiquitin ligase complexes control nutrient transporter endocytosis in response to amino acids
Vasyl Ivashov, Johannes Zimmer, Sinead Schwabl, Jennifer Kahlhofer, Sabine Weys, Ronald Gstir, Thomas Jakschitz, Leopold Kremser, Günther K Bonn, Herbert Lindner, Lukas A Huber, Sebastien Leon, Oliver Schmidt, David Teis
eLife. 2020; 9: e58246. Published online 2020 Aug 3. doi: 10.7554/eLife.58246
PMCID:
PMC7449699
AbstractArticlePDF–3.9M
10.
Periprotein lipidomes of Saccharomyces cerevisiae provide a flexible environment for conformational changes of membrane proteins
Joury S van 't Klooster, Tan-Yun Cheng, Hendrik R Sikkema, Aike Jeucken, Branch Moody, Bert Poolman
eLife. 2020; 9: e57003. Published online 2020 Apr 17. doi: 10.7554/eLife.57003
PMCID:
PMC7182430
AbstractArticlePDF–2.2M
11.
Disentangling strictly self-serving mutations from win-win mutations in a mutualistic microbial community
Samuel Frederick Mock Hart, Jose Mario Bello Pineda, Chi-Chun Chen, Robin Green, Wenying Shou
eLife. 2019; 8: e44812. Published online 2019 Jun 4. doi: 10.7554/eLife.44812
PMCID:
PMC6548503
AbstractArticlePDF–1005K
12.
Accelerated invagination of vacuoles as a stress response in chronically heat-stressed yeasts
Ayane Ishii, Masahito Kawai, Haruka Noda, Hiroyuki Kato, Kohei Takeda, Kotomi Asakawa, Yoshinobu Ichikawa, Tomohiro Sasanami, Keiji Tanaka, Yoko Kimura
Sci Rep. 2018; 8: 2644. Published online 2018 Feb 8. doi: 10.1038/s41598-018-20781-8
PMCID:
PMC5805771
AbstractArticlePDF–5.4M
13.
Steric exclusion and protein conformation determine the localization of plasma membrane transporters
Frans Bianchi, Łukasz Syga, Gemma Moiset, Dian Spakman, Paul E. Schavemaker, Christiaan M. Punter, Anne-Bart Seinen, Antoine M. van Oijen, Andrew Robinson, Bert Poolman
Nat Commun. 2018; 9: 501. Published online 2018 Feb 5. doi: 10.1038/s41467-018-02864-2
PMCID:
PMC5799302
AbstractArticlePDF–2.0M
14.
Architecture and dynamics of overlapped RNA regulatory networks
Christopher P. Lapointe, Melanie A. Preston, Daniel Wilinski, Harriet A.J. Saunders, Zachary T. Campbell, Marvin Wickens
RNA. 2017 Nov; 23(11): 1636–1647. doi: 10.1261/rna.062687.117
PMCID:
PMC5648032
AbstractArticlePDF–6.6M
15.
A Functional Link Between Bir1 and the Saccharomyces cerevisiae Ctf19 Kinetochore Complex Revealed Through Quantitative Fitness Analysis
Vasso Makrantoni, Adam Ciesiolka, Conor Lawless, Josefin Fernius, Adele Marston, David Lydall, Michael J. R. Stark
G3 (Bethesda) 2017 Sep; 7(9): 3203–3215. Published online 2017 Jul 28. doi: 10.1534/g3.117.300089
PMCID:
PMC5592945
AbstractArticlePDF–1.7M
16.
A network of conserved synthetic lethal interactions for exploration of precision cancer therapy
Rohith Srivas, John Paul Shen, Chih Cheng Yang, Su Ming Sun, Jianfeng Li, Andrew M. Gross, James Jensen, Katherine Licon, Ana Bojorquez-Gomez, Kristin Klepper, Justin Huang, Daniel Pekin, Jia L. Xu, Huwate Yeerna, Vignesh Sivaganesh, Leonie Kollenstart, Haico van Attikum, Pedro Aza-Blanc, Robert W. Sobol, Trey Ideker
Mol Cell. Author manuscript; available in PMC 2017 Aug 4.
Published in final edited form as: Mol Cell. 2016 Aug 4; 63(3): 514–525. Published online 2016 Jul 21. doi: 10.1016/j.molcel.2016.06.022
PMCID:
PMC5209245
AbstractArticlePDF–1.6M
17.
A novel translational control mechanism involving RNA structures within coding sequences
Jennifer Jungfleisch, Danny D. Nedialkova, Ivan Dotu, Katherine E. Sloan, Neus Martinez-Bosch, Lukas Brüning, Emanuele Raineri, Pilar Navarro, Markus T. Bohnsack, Sebastian A. Leidel, Juana Díez
Genome Res. 2017 Jan; 27(1): 95–106. doi: 10.1101/gr.209015.116
Correction in:
Genome Res. 2017 Apr; 27(4): 663.
PMCID:
PMC5204348
AbstractArticlePDF–1.3M
18.
Asymmetry in inward- and outward-affinity constant of transport explain unidirectional lysine flux in Saccharomyces cerevisiae
Frans Bianchi, Joury S. van ‘t Klooster, Stephanie J. Ruiz, Katja Luck, Tjeerd Pols, Ina L. Urbatsch, Bert Poolman
Sci Rep. 2016; 6: 31443. Published online 2016 Aug 23. doi: 10.1038/srep31443
PMCID:
PMC4993999
AbstractArticlePDF–976K
19.
A comprehensive analysis of replicative lifespan in 4,698 single-gene deletion strains uncovers conserved mechanisms of aging
Mark A. McCormick, Joe R. Delaney, Mitsuhiro Tsuchiya, Scott Tsuchiyama, Anna Shemorry, Sylvia Sim, Annie Chia-Zong Chou, Umema Ahmed, Daniel Carr, Christopher J. Murakami, Jennifer Schleit, George L. Sutphin, Brian M. Wasko, Christopher F. Bennett, Adrienne M. Wang, Brady Olsen, Richard P. Beyer, Theodor K. Bammler, Donna Prunkard, Simon C. Johnson, Juniper K. Pennypacker, Elroy An, Arieanna Anies, Anthony S. Castanza, Eunice Choi, Nick Dang, Shiena Enerio, Marissa Fletcher, Lindsay Fox, Sarani Goswami, Sean A. Higgins, Molly A. Holmberg, Di Hu, Jessica Hui, Monika Jelic, Ki-Soo Jeong, Elijah Johnston, Emily O. Kerr, Jin Kim, Diana Kim, Katie Kirkland, Shannon Klum, Soumya Kotireddy, Eric Liao, Michael Lim, Michael S. Lin, Winston C. Lo, Dan Lockshon, Hillary A. Miller, Richard M. Moller, Brian Muller, Jonathan Oakes, Diana N. Pak, Zhao Jun Peng, Kim M. Pham, Tom G. Pollard, Prarthana Pradeep, Dillon Pruett, Dilreet Rai, Brett Robison, Ariana A. Rodriguez, Bopharoth Ros, Michael Sage, Manpreet K. Singh, Erica D. Smith, Katie Snead, Amrita Solanky, Benjamin L. Spector, Kristan K. Steffen, Bie Nga Tchao, Marc K. Ting, Helen Vander Wende, Dennis Wang, K. Linnea Welton, Eric A. Westman, Rachel B. Brem, Xin-guang Liu, Yousin Suh, Zhongjun Zhou, Matt Kaeberlein, Brian K. Kennedy
Cell Metab. Author manuscript; available in PMC 2016 Nov 3.
Published in final edited form as: Cell Metab. 2015 Nov 3; 22(5): 895–906. Published online 2015 Oct 8. doi: 10.1016/j.cmet.2015.09.008
PMCID:
PMC4862740
AbstractArticlePDF–1.6M
20.
Protein-RNA networks revealed through covalent RNA marks
Christopher P. Lapointe, Daniel Wilinski, Harriet A. J. Saunders, Marvin Wickens
Nat Methods. Author manuscript; available in PMC 2016 May 18.
Published in final edited form as: Nat Methods. 2015 Dec; 12(12): 1163–1170. Published online 2015 Nov 2. doi: 10.1038/nmeth.3651
PMCID:
PMC4707952
AbstractArticlePDF–856K

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