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Items: 20

1.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
2.
A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon
Nir Cohen, Naama Aviram, Maya Schuldiner
EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385
PMCID:
PMC10233368
AbstractArticlePDF–1.2M
3.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
4.
A steric gating mechanism dictates the substrate specificity of a Rab-GEF
Laura L. Thomas, Solveig A. van der Vegt, J. Christopher Fromme
Dev Cell. Author manuscript; available in PMC 2020 Jan 7.
Published in final edited form as: Dev Cell. 2019 Jan 7; 48(1): 100–114.e9. Published online 2018 Dec 6. doi: 10.1016/j.devcel.2018.11.013
PMCID:
PMC6324938
AbstractArticlePDF–2.9M
5.
Global analysis of genetic circuitry and adaptive mechanisms enabling resistance to the azole antifungal drugs
Harley O’Connor Mount, Nicole M. Revie, Robert T. Todd, Kaitlin Anstett, Cathy Collins, Michael Costanzo, Charles Boone, Nicole Robbins, Anna Selmecki, Leah E. Cowen
PLoS Genet. 2018 Apr; 14(4): e1007319. Published online 2018 Apr 27. doi: 10.1371/journal.pgen.1007319
PMCID:
PMC5922528
AbstractArticlePDF–7.1M
6.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
7.
The TRAPPIII complex activates the GTPase Ypt1 (Rab1) in the secretory pathway
Laura L. Thomas, Aaron M.N. Joiner, J. Christopher Fromme
J Cell Biol. 2018 Jan 2; 217(1): 283–298. doi: 10.1083/jcb.201705214
PMCID:
PMC5748984
AbstractArticlePDF–2.7M
8.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
9.
GTPase cross talk regulates TRAPPII activation of Rab11 homologues during vesicle biogenesis
Laura L. Thomas, J. Christopher Fromme
J Cell Biol. 2016 Nov 21; 215(4): 499–513. doi: 10.1083/jcb.201608123
PMCID:
PMC5119942
AbstractArticlePDF–2.8M
10.
One library to make them all: Streamlining yeast library creation by a SWAp-Tag (SWAT) strategy
Ido Yofe, Uri Weill, Matthias Meurer, Silvia Chuartzman, Einat Zalckvar, Omer Goldman, Shifra Ben-Dor, Conny Schütze, Nils Wiedemann, Michael Knop, Anton Khmelinskii, Maya Schuldiner
Nat Methods. Author manuscript; available in PMC 2016 Sep 22.
Published in final edited form as: Nat Methods. 2016 Apr; 13(4): 371–378. Published online 2016 Feb 29. doi: 10.1038/nmeth.3795
PMCID:
PMC4869835
AbstractArticlePDF–2.7M
11.
Trs130 participates in autophagy through GTPases Ypt31/32 in Saccharomyces cerevisiae
Shenshen Zou, Yong Chen, Yutao Liu, Nava Segev, Sidney Yu, Yan Liu, Gaoyi Min, Min Ye, Yan Zeng, Xiaoping Zhu, Bing Hong, Lars Olof Björn, Yongheng Liang, Shaoshan Li, Zhiping Xie
Traffic. Author manuscript; available in PMC 2014 Feb 1.
Published in final edited form as: Traffic. 2013 Feb; 14(2): 233–246. Published online 2012 Nov 21. doi: 10.1111/tra.12024
PMCID:
PMC3538905
AbstractArticlePDF–4.5M
12.
Functional wiring of the yeast kinome revealed by global analysis of genetic network motifs
Sara Sharifpoor, Dewald van Dyk, Michael Costanzo, Anastasia Baryshnikova, Helena Friesen, Alison C. Douglas, Ji-Young Youn, Benjamin VanderSluis, Chad L. Myers, Balázs Papp, Charles Boone, Brenda J. Andrews
Genome Res. 2012 Apr; 22(4): 791–801. doi: 10.1101/gr.129213.111
PMCID:
PMC3317160
AbstractArticlePDF–998K
13.
Global Functional Map of the p23 Molecular Chaperone Reveals an Extensive Cellular Network
Frank J. Echtenkamp, Elena Zelin, Ellinor Oxelmark, Joyce I. Woo, Brenda J. Andrews, Michael Garabedian, Brian C. Freeman
Mol Cell. Author manuscript; available in PMC 2012 Jul 22.
Published in final edited form as: Mol Cell. 2011 Jul 22; 43(2): 229–241. doi: 10.1016/j.molcel.2011.05.029
PMCID:
PMC3155841
AbstractArticlePDF–1.7M
14.
The nucleotide sequence of Saccharomyces cerevisiae chromosome V
F. S. Dietrich, J. Mulligan, K. Hennessy, M. A. Yelton, E. Allen, R. Araujo, E. Aviles, A. Berno, T. Brennan, J. Carpenter, E. Chen, J. M. Cherry, E. Chung, M. Duncan, E. Guzman, G. Hartzell, S. Hunicke-Smith, R. W. Hyman, A. Kayser, C. Komp, D. Lashkari, H. Lew, D. Lin, D. Mosedale, K. Nakahara, A. Namath, R. Norgren, P. Oefner, C. Oh, F. X. Petel, D. Roberts, P. Sehl, S. Schramm, T. Shogren, V. Smith, P. Taylor, Y. Wei, D. Botstein, R. W. Davis
Nature. Author manuscript; available in PMC 2011 Mar 15.
Published in final edited form as: Nature. 1997 May 29; 387(6632 Suppl): 78–81.
PMCID:
PMC3057095
AbstractArticlePDF–73K
15.
High Quality Binary Protein Interaction Map of the Yeast Interactome Network
Haiyuan Yu, Pascal Braun, Muhammed A. Yildirim, Irma Lemmens, Kavitha Venkatesan, Julie Sahalie, Tomoko Hirozane-Kishikawa, Fana Gebreab, Na Li, Nicolas Simonis, Tong Hao, Jean-Francois Rual, Amélie Dricot, Alexei Vazquez, Ryan R. Murray, Christophe Simon, Leah Tardivo, Stanley Tam, Nenad Svrzikapa, Changyu Fan, Anne-Sophie de Smet, Adriana Motyl, Michael E. Hudson, Juyong Park, Xiaofeng Xin, Michael E. Cusick, Troy Moore, Charlie Boone, Michael Snyder, Frederick P. Roth, Albert-László Barabási, Jan Tavernier, David E. Hill, Marc Vidal
Science. Author manuscript; available in PMC 2009 Sep 18.
Published in final edited form as: Science. 2008 Oct 3; 322(5898): 104–110. Published online 2008 Aug 21. doi: 10.1126/science.1158684
PMCID:
PMC2746753
AbstractArticlePDF–2.2M
16.
Genetic interaction network of the Saccharomyces cerevisiae type 1 phosphatase Glc7
Michael R Logan, Thao Nguyen, Nicolas Szapiel, James Knockleby, Hanting Por, Megan Zadworny, Michael Neszt, Paul Harrison, Howard Bussey, Craig A Mandato, Jackie Vogel, Guillaume Lesage
BMC Genomics. 2008; 9: 336. Published online 2008 Jul 15. doi: 10.1186/1471-2164-9-336
PMCID:
PMC2481269
AbstractArticlePDF–1.8M
17.
The Clathrin Adaptor Gga2p Is a Phosphatidylinositol 4-phosphate Effector at the Golgi Exit
Lars Demmel, Maike Gravert, Ebru Ercan, Bianca Habermann, Thomas Müller-Reichert, Viktoria Kukhtina, Volker Haucke, Thorsten Baust, Marc Sohrmann, Yannis Kalaidzidis, Christian Klose, Mike Beck, Matthias Peter, Christiane Walch-Solimena
Mol Biol Cell. 2008 May; 19(5): 1991–2002. doi: 10.1091/mbc.E06-10-0937
PMCID:
PMC2366843
AbstractArticlePDF–2.7M
18.
Functional Dissection of the NuA4 Histone Acetyltransferase Reveals Its Role as a Genetic Hub and that Eaf1 Is Essential for Complex Integrity
Leslie Mitchell, Jean-Philippe Lambert, Maria Gerdes, Ashraf S. Al-Madhoun, Ilona S. Skerjanc, Daniel Figeys, Kristin Baetz
Mol Cell Biol. 2008 Apr; 28(7): 2244–2256. Published online 2008 Jan 22. doi: 10.1128/MCB.01653-07
PMCID:
PMC2268438
AbstractArticlePDF–714K
19.
The Gcs1 Arf-GAP Mediates Snc1,2 v-SNARE Retrieval to the Golgi in Yeast
Micah Robinson, Pak Phi Poon, Christina Schindler, Lois E. Murray, Rachel Kama, Galina Gabriely, Richard A. Singer, Anne Spang, Gerald C. Johnston, Jeffrey E. Gerst
Mol Biol Cell. 2006 Apr; 17(4): 1845–1858. doi: 10.1091/mbc.E05-09-0832
PMCID:
PMC1415299
AbstractArticlePDF–655K
20.
A comprehensive two-hybrid analysis to explore the yeast protein interactome
Takashi Ito, Tomoko Chiba, Ritsuko Ozawa, Mikio Yoshida, Masahira Hattori, Yoshiyuki Sakaki
Proc Natl Acad Sci U S A. 2001 Apr 10; 98(8): 4569–4574. Published online 2001 Mar 13. doi: 10.1073/pnas.061034498
PMCID:
PMC31875
AbstractArticlePDF–110K

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