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Select item 107557851.

Structure of phosphorylated-like RssB, the adaptor delivering σ^s to the ClpXP proteolytic machinery, reveals an interface switch for activation

Christiane Brugger, Jacob Schwartz, Scott Novick, Song Tong, Joel R. Hoskins, Nadim Majdalani, Rebecca Kim, Martin Filipovski, Sue Wickner, Susan Gottesman, Patrick R. Griffin, Alexandra M. Deaconescu

J Biol Chem. 2023 Dec; 299(12): 105440. Published online 2023 Nov 9. doi: 10.1016/j.jbc.2023.105440

PMCID:: PMC10755785

Abstract Article PDF–3.9M

Select item 79805122.

Phospho‐dependent signaling during the general stress response by the atypical response regulator and ClpXP adaptor RssB

Jacob Schwartz, Jonghyeon Son, Christiane Brugger, Alexandra M. Deaconescu

Protein Sci. 2021 Apr; 30(4): 899–907. Published online 2021 Mar 1. doi: 10.1002/pro.4047

PMCID:: PMC7980512

Abstract Article PDF–1.4M

Select item 72264683.

Insight into the RssB-Mediated Recognition and Delivery of σ^s to the AAA+ Protease, ClpXP

Dimce Micevski, Kornelius Zeth, Terrence D. Mulhern, Verena J. Schuenemann, Jessica E. Zammit, Kaye N. Truscott, David A. Dougan

Biomolecules. 2020 Apr; 10(4): 615. Published online 2020 Apr 16. doi: 10.3390/biom10040615

PMCID:: PMC7226468

Abstract Article PDF–3.9M

Select item 65460544.

Structural basis for inhibition of a response regulator of σ^S stability by a ClpXP antiadaptor

Victoria Dorich, Christiane Brugger, Arti Tripathi, Joel R. Hoskins, Song Tong, Margaret M. Suhanovsky, Amita Sastry, Sue Wickner, Susan Gottesman, Alexandra M. Deaconescu

Genes Dev. 2019 Jun 1; 33(11-12): 718–732. doi: 10.1101/gad.320168.118

PMCID:: PMC6546054

Abstract Article PDF–3.7M

Select item 44284395.

Anti-adaptors use distinct modes of binding to inhibit the RssB-dependent turnover of RpoS (σ^S) by ClpXP

Dimce Micevski, Jessica E. Zammit, Kaye N. Truscott, David A. Dougan

Front Mol Biosci. 2015; 2: 15. Published online 2015 Apr 23. doi: 10.3389/fmolb.2015.00015

PMCID:: PMC4428439

Abstract Article PDF–1.3M

Select item 41238556.

The binary protein-protein interaction landscape of Escherichia coli

Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz

Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.

Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831

PMCID:: PMC4123855

Abstract Article PDF–1.1M

Select item 27725027.

The Response Regulator SprE (RssB) Modulates Polyadenylation and mRNA Stability in Escherichia coli

Valerie J. Carabetta, Bijoy K. Mohanty, Sidney R. Kushner, Thomas J. Silhavy

J Bacteriol. 2009 Nov; 191(22): 6812–6821. Published online 2009 Sep 18. doi: 10.1128/JB.00870-09

PMCID:: PMC2772502

Abstract Article PDF–903K

Select item 26267518.

A DNA damage response in Escherichia coli involving the alternative sigma factor, RpoS

Houra Merrikh, Alexander E. Ferrazzoli, Alexandre Bougdour, Anique Olivier-Mason, Susan T. Lovett

Proc Natl Acad Sci U S A. 2009 Jan 13; 106(2): 611–616. Published online 2009 Jan 5. doi: 10.1073/pnas.0803665106

PMCID:: PMC2626751

Abstract Article PDF–727K

Select item 24930929.

Role of Global Regulators and Nucleotide Metabolism in Antibiotic Tolerance in Escherichia coli

Sonja Hansen, Kim Lewis, Marin Vulić

Antimicrob Agents Chemother. 2008 Aug; 52(8): 2718–2726. Published online 2008 Jun 2. doi: 10.1128/AAC.00144-08

PMCID:: PMC2493092

Abstract Article PDF–398K

Select item 222983710.

Mutations in two global regulators lower individual mortality in Escherichia coli

Fanette Fontaine, Eric J Stewart, Ariel B Lindner, François Taddei

Mol Microbiol. 2008 Jan; 67(1): 2–14. Published online 2007 Nov 25. doi: 10.1111/j.1365-2958.2007.05988.x

PMCID:: PMC2229837

Abstract Article PDF–597K

Select item 183853611.

Decline in ribosomal fidelity contributes to the accumulation and stabilization of the master stress response regulator σ^S upon carbon starvation

Åsa Fredriksson, Manuel Ballesteros, Celeste N. Peterson, Örjan Persson, Thomas J. Silhavy, Thomas Nyström

Genes Dev. 2007 Apr 1; 21(7): 862–874. doi: 10.1101/gad.409407

PMCID:: PMC1838536

Abstract Article PDF–578K

Select item 182938812.

Stationary phase reorganisation of the Escherichia coli transcription machinery by Crl protein, a fine-tuner of σ^s activity and levels

Athanasios Typas, Claudia Barembruch, Alexandra Possling, Regine Hengge

EMBO J. 2007 Mar 21; 26(6): 1569–1578. Published online 2007 Mar 1. doi: 10.1038/sj.emboj.7601629

PMCID:: PMC1829388

Abstract Article PDF–233K

Select item 179730913.

Genome-Wide Screening of Genes Required for Swarming Motility in Escherichia coli K-12

Tetsuyoshi Inoue, Ryuji Shingaki, Shotaro Hirose, Kaori Waki, Hirotada Mori, Kazuhiro Fukui

J Bacteriol. 2007 Feb; 189(3): 950–957. Published online 2006 Nov 22. doi: 10.1128/JB.01294-06

PMCID:: PMC1797309

Abstract Article PDF–141K

Select item 168148114.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Abstract Article PDF–141K

Select item 147228915.

Modulating RssB activity: IraP, a novel regulator of σ^S stability in Escherichia coli

Alexandre Bougdour, Sue Wickner, Susan Gottesman

Genes Dev. 2006 Apr 1; 20(7): 884–897. doi: 10.1101/gad.1400306

PMCID:: PMC1472289

Abstract Article PDF–694K

Select item 145705216.

Large-scale identification of protein–protein interaction of Escherichia coli K-12

Mohammad Arifuzzaman, Maki Maeda, Aya Itoh, Kensaku Nishikata, Chiharu Takita, Rintaro Saito, Takeshi Ara, Kenji Nakahigashi, Hsuan-Cheng Huang, Aki Hirai, Kohei Tsuzuki, Seira Nakamura, Mohammad Altaf-Ul-Amin, Taku Oshima, Tomoya Baba, Natsuko Yamamoto, Tomoyo Kawamura, Tomoko Ioka-Nakamichi, Masanari Kitagawa, Masaru Tomita, Shigehiko Kanaya, Chieko Wada, Hirotada Mori

Genome Res. 2006 May; 16(5): 686–691. doi: 10.1101/gr.4527806

PMCID:: PMC1457052

Abstract Article PDF–536K

Select item 132520017.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405