PMC Links for GEO Profiles (Select 5409420) - PMC

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Items: 18

Select item 92625951.

Synthesis of the NarP response regulator of nitrate respiration in Escherichia coli is regulated at multiple levels by Hfq and small RNAs

Anaïs Brosse, Pierre Boudry, Anne Walburger, Axel Magalon, Maude Guillier

Nucleic Acids Res. 2022 Jul 8; 50(12): 6753–6768. Published online 2022 Jun 24. doi: 10.1093/nar/gkac504

PMCID:: PMC9262595

Abstract Article PDF–1.8M

Select item 54545332.

Optimized fragmentation schemes and data analysis strategies for proteome-wide cross-link identification

Fan Liu, Philip Lössl, Richard Scheltema, Rosa Viner, Albert J. R. Heck

Nat Commun. 2017; 8: 15473. Published online 2017 May 19. doi: 10.1038/ncomms15473

PMCID:: PMC5454533

Abstract Article PDF–1.5M

Select item 41238553.

The binary protein-protein interaction landscape of Escherichia coli

Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz

Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.

Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831

PMCID:: PMC4123855

Abstract Article PDF–1.1M

Select item 30686934.

Functional roles for the GerE-family carboxyl-terminal domains of nitrate response regulators NarL and NarP of Escherichia coli K-12

Alice V. Lin, Valley Stewart

Microbiology (Reading) 2010 Oct; 156(Pt 10): 2933–2943. doi: 10.1099/mic.0.040469-0

PMCID:: PMC3068693

Abstract Article PDF–302K

Select item 30341405.

Asymmetric cross regulation between the nitrate-responsive NarX-NarL and NarQ-NarP two-component regulatory systems from Escherichia coli K-12

Chris E. Noriega, Hsia-Yin Lin, Li-Ling Chen, Stanly B. Williams, Valley Stewart

Mol Microbiol. Author manuscript; available in PMC 2011 Feb 6.

Published in final edited form as: Mol Microbiol. 2010 Jan; 75(2): 394–412. Published online 2009 Dec 4. doi: 10.1111/j.1365-2958.2009.06987.x

PMCID:: PMC3034140

Abstract Article PDF–1.2M

Select item 22237366.

Substitutions at Auxiliary Operator O3 Enhance Repression by Nitrate-Responsive Regulator NarL at Synthetic lac Control Regions in Escherichia coli K-12

Valley Stewart, Peggy J. Bledsoe

J Bacteriol. 2008 Jan; 190(1): 428–433. Published online 2007 Oct 26. doi: 10.1128/JB.01431-07

PMCID:: PMC2223736

Abstract Article PDF–112K

Select item 21687527.

Activation of yeaR-yoaG Operon Transcription by the Nitrate-Responsive Regulator NarL Is Independent of Oxygen- Responsive Regulator Fnr in Escherichia coli K-12

Hsia-Yin Lin, Peggy J. Bledsoe, Valley Stewart

J Bacteriol. 2007 Nov; 189(21): 7539–7548. Published online 2007 Aug 24. doi: 10.1128/JB.00953-07

PMCID:: PMC2168752

Abstract Article PDF–159K

Select item 18057558.

Comparative genomic analysis of regulation of anaerobic respiration in ten genomes from three families of gamma-proteobacteria (Enterobacteriaceae, Pasteurellaceae, Vibrionaceae)

Dmitry A Ravcheev, Anna V Gerasimova, Andrey A Mironov, Mikhail S Gelfand

BMC Genomics. 2007; 8: 54. Published online 2007 Feb 21. doi: 10.1186/1471-2164-8-54

PMCID:: PMC1805755

Abstract Article PDF–1.1M

Select item 16814819.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Abstract Article PDF–141K

Select item 163628810.

The Escherichia coli K-12 NarL and NarP Proteins Insulate the nrf Promoter from the Effects of Integration Host Factor

Douglas F. Browning, David J. Lee, Alan J. Wolfe, Jeffrey A. Cole, Stephen J. W. Busby

J Bacteriol. 2006 Nov; 188(21): 7449–7456. Published online 2006 Aug 25. doi: 10.1128/JB.00975-06

PMCID:: PMC1636288

Abstract Article PDF–491K

Select item 152207411.

Regulon and promoter analysis of the E. coli heat-shock factor, σ³², reveals a multifaceted cellular response to heat stress

Gen Nonaka, Matthew Blankschien, Christophe Herman, Carol A. Gross, Virgil A. Rhodius

Genes Dev. 2006 Jul 1; 20(13): 1776–1789. doi: 10.1101/gad.1428206

PMCID:: PMC1522074

Abstract Article PDF–548K

Select item 132520012.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405