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Items: 1 to 20 of 26

1.
Expression of a coronavirus ribosomal frameshift signal in Escherichia coli: influence of tRNA anticodon modification on frameshifting
Ian Brierley, Michayla R Meredith, Alison J Bloys, Tord G Hagervall
J Mol Biol. 1997 Jul 18; 270(3): 360–373. Published online 2002 May 25. doi: 10.1006/jmbi.1997.1134
PMCID:
PMC7126968
AbstractArticlePDF–449K
2.
Absolute requirement for polyamines for growth of Escherichia coli mutants (mnmE/G) defective in modification of the wobble anticodon of transfer-RNA
Christopher Keller, Manas Chattopadhyay, Herbert Tabor
FEMS Microbiol Lett. 2019 May; 366(10): fnz110. Published online 2019 May 23. doi: 10.1093/femsle/fnz110
PMCID:
PMC6700685
AbstractArticlePDF–1.3M
3.
The uridylyltransferase GlnD and tRNA modification GTPase MnmE allosterically control Escherichia coli folylpoly-γ-glutamate synthase FolC
Irina A. Rodionova, Norman Goodacre, Jimmy Do, Ali Hosseinnia, Mohan Babu, Peter Uetz, Milton H. Saier, Jr.
J Biol Chem. 2018 Oct 5; 293(40): 15725–15732. Published online 2018 Aug 8. doi: 10.1074/jbc.RA118.004425
PMCID:
PMC6177579
AbstractArticlePDF–1.2M
4.
Identification of Genes Required for Growth of Escherichia coli MG1655 at Moderately Low pH
Bram Vivijs, Abram Aertsen, Chris W. Michiels
Front Microbiol. 2016; 7: 1672. Published online 2016 Oct 25. doi: 10.3389/fmicb.2016.01672
PMCID:
PMC5078493
AbstractArticlePDF–2.3M
5.
Study on the chaperone properties of conserved GTPases
Xiang Wang, Jiaying Xue, Zhe Sun, Yan Qin, Weimin Gong
Protein Cell. 2012 Jan; 3(1): 44–50. Published online 2012 Jan 13. doi: 10.1007/s13238-011-1133-z
PMCID:
PMC4875214
AbstractArticlePDF–857K
6.
The binary protein-protein interaction landscape of Escherichia coli
Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz
Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.
Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831
PMCID:
PMC4123855
AbstractArticlePDF–1.1M
7.
The output of the tRNA modification pathways controlled by the Escherichia coli MnmEG and MnmC enzymes depends on the growth conditions and the tRNA species
Ismaïl Moukadiri, M.-José Garzón, Glenn R. Björk, M.-Eugenia Armengod
Nucleic Acids Res. 2014 Feb; 42(4): 2602–2623. Published online 2013 Nov 26. doi: 10.1093/nar/gkt1228
PMCID:
PMC3936742
AbstractArticlePDF–1.1M
8.
Stabilization of G Domain Conformations in the tRNA-modifying MnmE-GidA Complex Observed with Double Electron Electron Resonance Spectroscopy
Sabine Böhme, Simon Meyer, André Krüger, Heinz-Jürgen Steinhoff, Alfred Wittinghofer, Johann P. Klare
J Biol Chem. 2010 May 28; 285(22): 16991–17000. Published online 2010 Mar 30. doi: 10.1074/jbc.M109.096131
PMCID:
PMC2878087
AbstractArticlePDF–2.7M
9.
Evolutionarily conserved proteins MnmE and GidA catalyze the formation of two methyluridine derivatives at tRNA wobble positions
Ismaïl Moukadiri, Silvia Prado, Julio Piera, Adrián Velázquez-Campoy, Glenn R. Björk, M.-Eugenia Armengod
Nucleic Acids Res. 2009 Nov; 37(21): 7177–7193. Published online 2009 Sep 18. doi: 10.1093/nar/gkp762
PMCID:
PMC2790889
AbstractArticlePDF–1.6M
10.
Kissing G Domains of MnmE Monitored by X-Ray Crystallography and Pulse Electron Paramagnetic Resonance Spectroscopy
Simon Meyer, Sabine Böhme, André Krüger, Heinz-Jürgen Steinhoff, Johann P. Klare, Alfred Wittinghofer
PLoS Biol. 2009 Oct; 7(10): e1000212. Published online 2009 Oct 6. doi: 10.1371/journal.pbio.1000212
PMCID:
PMC2749940
AbstractArticlePDF–791K
11.
Global Functional Atlas of Escherichia coli Encompassing Previously Uncharacterized Proteins
Pingzhao Hu, Sarath Chandra Janga, Mohan Babu, J. Javier Díaz-Mejía, Gareth Butland, Wenhong Yang, Oxana Pogoutse, Xinghua Guo, Sadhna Phanse, Peter Wong, Shamanta Chandran, Constantine Christopoulos, Anaies Nazarians-Armavil, Negin Karimi Nasseri, Gabriel Musso, Mehrab Ali, Nazila Nazemof, Veronika Eroukova, Ashkan Golshani, Alberto Paccanaro, Jack F Greenblatt, Gabriel Moreno-Hagelsieb, Andrew Emili
PLoS Biol. 2009 Apr; 7(4): e1000096. Published online 2009 Apr 28. doi: 10.1371/journal.pbio.1000096
PMCID:
PMC2672614
AbstractArticle
12.
Visualizing the proteome of Escherichia coli: an efficient and versatile method for labeling chromosomal coding DNA sequences (CDSs) with fluorescent protein genes
Rory M. Watt, Jing Wang, Meikid Leong, Hsiang-fu Kung, Kathryn S.E. Cheah, Depei Liu, Antoine Danchin, Jian-Dong Huang
Nucleic Acids Res. 2007 Mar; 35(6): e37. Published online 2007 Jan 31. doi: 10.1093/nar/gkl1158
PMCID:
PMC1874593
AbstractArticlePDF–5.3M
13.
Genome-Wide Screening of Genes Required for Swarming Motility in Escherichia coli K-12
Tetsuyoshi Inoue, Ryuji Shingaki, Shotaro Hirose, Kaori Waki, Hirotada Mori, Kazuhiro Fukui
J Bacteriol. 2007 Feb; 189(3): 950–957. Published online 2006 Nov 22. doi: 10.1128/JB.01294-06
PMCID:
PMC1797309
AbstractArticlePDF–141K
14.
Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110
Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi
Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049
PMCID:
PMC1681481
AbstractArticlePDF–141K
15.
Further insights into the tRNA modification process controlled by proteins MnmE and GidA of Escherichia coli
Lucía Yim, Ismaïl Moukadiri, Glenn R. Björk, M.-Eugenia Armengod
Nucleic Acids Res. 2006 Nov; 34(20): 5892–5905. Published online 2006 Oct 24. doi: 10.1093/nar/gkl752
PMCID:
PMC1635325
AbstractArticlePDF–629K
16.
Dimerisation-dependent GTPase reaction of MnmE: how potassium acts as GTPase-activating element
Andrea Scrima, Alfred Wittinghofer
EMBO J. 2006 Jun 21; 25(12): 2940–2951. Published online 2006 Jun 8. doi: 10.1038/sj.emboj.7601171
PMCID:
PMC1500855
AbstractArticlePDF–575K
17.
Transfer RNA modifications that alter +1 frameshifting in general fail to affect −1 frameshifting
JAUNIUS URBONAVIC̆IUS, GUILLAUME STAHL, JÉRÔME M.B. DURAND, SAMIA N. BEN SALEM, QIANG QIAN, PHILIP J. FARABAUGH, GLENN R. BJÖRK
RNA. 2003 Jun; 9(6): 760–768. doi: 10.1261/rna.5210803
PMCID:
PMC1370442
AbstractArticlePDF–197K
18.
Escherichia coli K-12: a cooperatively developed annotation snapshot—2005
Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner
Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405
PMCID:
PMC1325200
AbstractArticlePDF–204K
19.
The Escherichia coli trmE (mnmE) gene, involved in tRNA modification, codes for an evolutionarily conserved GTPase with unusual biochemical properties.
H Cabedo, F Macián, M Villarroya, J C Escudero, M Martínez-Vicente, E Knecht, M E Armengod
EMBO J. 1999 Dec 15; 18(24): 7063–7076. doi: 10.1093/emboj/18.24.7063
PMCID:
PMC1171769
SummaryPDF–393K
20.
The structure of the TrmE GTP-binding protein and its implications for tRNA modification
Andrea Scrima, Ingrid R Vetter, M Eugenia Armengod, Alfred Wittinghofer
EMBO J. 2005 Jan 12; 24(1): 23–33. Published online 2004 Dec 16. doi: 10.1038/sj.emboj.7600507
PMCID:
PMC544919
AbstractArticlePDF–543K

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