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Items: 1 to 20 of 179

1.
Alternative translation initiation by ribosomal leaky scanning produces multiple isoforms of the Pif1 helicase
Tomas Lama-Diaz, Miguel G Blanco
Nucleic Acids Res. 2024 Jul 8; 52(12): 6928–6944. Published online 2024 May 23. doi: 10.1093/nar/gkae400
PMCID:
PMC11229318
AbstractArticlePDF–2.6M
2.
Two residues in the DNA binding site of Pif1 helicase are essential for nuclear functions but dispensable for mitochondrial respiratory growth
Jun Gao, David R Proffitt, John C Marecki, Reine U Protacio, Wayne P Wahls, Alicia K Byrd, Kevin D Raney
Nucleic Acids Res. 2024 Jun 24; 52(11): 6543–6557. Published online 2024 May 16. doi: 10.1093/nar/gkae403
PMCID:
PMC11194084
AbstractArticlePDF–2.2M
3.
The functional significance of the RPA- and PCNA-dependent recruitment of Pif1 to DNA
Oleksii Kotenko, Svetlana Makovets
EMBO Rep. 2024 Apr; 25(4): 1734–1751. Published online 2024 Mar 13. doi: 10.1038/s44319-024-00114-9
PMCID:
PMC11014909
AbstractArticlePDF–1.2M
4.
Loss of Dna2 fidelity results in decreased Exo1-mediated resection at DNA double-strand breaks
Aditya Mojumdar, Courtney Granger, Martine Lunke, Jennifer A. Cobb
J Biol Chem. 2024 Mar; 300(3): 105708. Published online 2024 Feb 2. doi: 10.1016/j.jbc.2024.105708
PMCID:
PMC10909748
AbstractArticlePDF–2.9M
5.
Rrm3 and Pif1 division of labor during replication through leading and lagging strand G-quadruplex
Mor Varon, Daniel Dovrat, Jonathan Heuzé, Ioannis Tsirkas, Saurabh P Singh, Philippe Pasero, Roberto Galletto, Amir Aharoni
Nucleic Acids Res. 2024 Feb 28; 52(4): 1753–1762. Published online 2023 Dec 20. doi: 10.1093/nar/gkad1205
PMCID:
PMC10899776
AbstractArticlePDF–1.2M
6.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
7.
Pif1 helicase mediates remodeling of protein-nucleic acid complexes by promoting dissociation of Sub1 from G-quadruplex DNA and Cdc13 from G-rich single-stranded DNA
Shubeena Chib, Wezley C. Griffin, Jun Gao, David R. Proffitt, Alicia K. Byrd, Kevin D. Raney
Biochemistry. Author manuscript; available in PMC 2024 Dec 5.
Published in final edited form as: Biochemistry. 2023 Dec 5; 62(23): 3360–3372. Published online 2023 Nov 10. doi: 10.1021/acs.biochem.3c00441
PMCID:
PMC10841737
AbstractArticlePDF–2.9M
8.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
9.
The increase in cell death rates in caloric restricted cells of the yeast helicase mutant rrm3 is Sir complex dependent
Andreas S. Ivessa, Sukhwinder Singh
Sci Rep. 2023; 13: 17832. Published online 2023 Oct 19. doi: 10.1038/s41598-023-45125-z
PMCID:
PMC10587150
AbstractArticlePDF–3.6M
10.
Identification of the nuclear localization signal in the Saccharomyces cerevisiae Pif1 DNA helicase
Rosemary S. Lee, Carly L. Geronimo, Liping Liu, Jerzy M. Twarowski, Anna Malkova, Virginia A. Zakian
PLoS Genet. 2023 Jul; 19(7): e1010853. Published online 2023 Jul 24. doi: 10.1371/journal.pgen.1010853
PMCID:
PMC10399864
AbstractArticlePDF–3.2M
11.
Single-molecule visualization of Pif1 helicase translocation on single-stranded DNA
Mainak Mustafi, Youngho Kwon, Patrick Sung, Eric C. Greene
J Biol Chem. 2023 Jun; 299(6): 104817. Published online 2023 May 11. doi: 10.1016/j.jbc.2023.104817
PMCID:
PMC10279920
AbstractArticlePDF–2.2M
12.
Pif1 family helicases promote mutation avoidance during DNA replication
Zhi-Xiong Zhou, Cindy Follonier, Scott A Lujan, Adam B Burkholder, Virginia A Zakian, Thomas A Kunkel
Nucleic Acids Res. 2022 Dec 9; 50(22): 12844–12855. Published online 2022 Dec 19. doi: 10.1093/nar/gkac1127
Correction in:
Nucleic Acids Res. 2023 Jun 23; 51(11): 5896.
PMCID:
PMC9825187
AbstractArticlePDF–3.0M
13.
Rad51-mediated interhomolog recombination during budding yeast meiosis is promoted by the meiotic recombination checkpoint and the conserved Pif1 helicase
Andrew Ziesel, Qixuan Weng, Jasvinder S. Ahuja, Abhishek Bhattacharya, Raunak Dutta, Evan Cheng, G. Valentin Börner, Michael Lichten, Nancy M. Hollingsworth
PLoS Genet. 2022 Dec; 18(12): e1010407. Published online 2022 Dec 12. doi: 10.1371/journal.pgen.1010407
PMCID:
PMC9779700
AbstractArticlePDF–4.6M
14.
Strand switching mechanism of Pif1 helicase induced by its collision with a G-quadruplex embedded in dsDNA
Jessica Valle-Orero, Martin Rieu, Phong Lan Thao Tran, Alexandra Joubert, Saurabh Raj, Jean-François Allemand, Vincent Croquette, Jean-Baptiste Boulé
Nucleic Acids Res. 2022 Aug 26; 50(15): 8767–8778. Published online 2022 Aug 10. doi: 10.1093/nar/gkac667
PMCID:
PMC9410907
AbstractArticlePDF–2.3M
15.
Identification of flexible Pif1–DNA interactions and their impacts on enzymatic activities
Jinghua Li, Jianbing Ma, Vikash Kumar, Hang Fu, Chunhua Xu, Shuang Wang, Qi Jia, Qinkai Fan, Xuguang Xi, Ming Li, Haiguang Liu, Ying Lu
Nucleic Acids Res. 2022 Jul 8; 50(12): 7002–7012. Published online 2022 Jun 24. doi: 10.1093/nar/gkac529
PMCID:
PMC9262596
AbstractArticlePDF–2.3M
16.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
17.
Investigating the role of G-quadruplexes at Saccharomyces cerevisiae telomeres
Sonia Stinus, Fernando R. Rosas Bringas, Lisa Wanders, Michael Chang
Microb Cell. 2022 Jun 6; 9(6): 126–132. Published online 2022 May 19. doi: 10.15698/mic2022.06.778
PMCID:
PMC9173700
AbstractArticlePDF–1.1M
18.
Pif1 Activity is Modulated by DNA Sequence and Structure
David G. Nickens, Matthew L. Bochman
Biochemistry. Author manuscript; available in PMC 2022 Apr 7.
Published in final edited form as: Biochemistry. 2022 Jan 4; 61(1): 10–20. Published online 2021 Dec 21. doi: 10.1021/acs.biochem.1c00614
PMCID:
PMC8987742
AbstractArticlePDF–1.1M
19.
Suppression of cdc13-2-associated senescence by pif1-m2 requires Ku-mediated telomerase recruitment
Enikő Fekete-Szücs, Fernando R Rosas Bringas, Sonia Stinus, Michael Chang
G3 (Bethesda) 2022 Jan; 12(1): jkab360. Published online 2021 Oct 13. doi: 10.1093/g3journal/jkab360
PMCID:
PMC8728030
AbstractArticlePDF–852K
20.
The interplay of RNA:DNA hybrid structure and G-quadruplexes determines the outcome of R-loop-replisome collisions
Charanya Kumar, Sahil Batra, Jack D Griffith, Dirk Remus
eLife. 2021; 10: e72286. Published online 2021 Sep 8. doi: 10.7554/eLife.72286
PMCID:
PMC8479836
AbstractArticlePDF–4.7M

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