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Select item 108724771.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 107001382.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 105166423.

ISW1a modulates cohesin distribution in centromeric and pericentromeric regions

Ireneusz Litwin, Małgorzata Nowicka, Katarzyna Markowska, Ewa Maciaszczyk-Dziubińska, Paulina Tomaszewska, Robert Wysocki, Karol Kramarz

Nucleic Acids Res. 2023 Sep 22; 51(17): 9101–9121. Published online 2023 Jul 24. doi: 10.1093/nar/gkad612

PMCID:: PMC10516642

Abstract Article PDF–2.8M

Select item 102478594.

Replisome-cohesin interactions provided by the Tof1-Csm3 and Mrc1 cohesion establishment factors

Sudikchya Shrestha, Masashi Minamino, Zhuo A. Chen, Céline Bouchoux, Juri Rappsilber, Frank Uhlmann

Chromosoma. 2023; 132(2): 117–135. Published online 2023 May 11. doi: 10.1007/s00412-023-00797-4

PMCID:: PMC10247859

Abstract Article PDF–2.3M

Select item 102333685.

A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon

Nir Cohen, Naama Aviram, Maya Schuldiner

EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385

PMCID:: PMC10233368

Abstract Article PDF–1.2M

Select item 101950256.

Saccharomyces cerevisiae RAD53 (CHK2) but not CHK1 is required for double-strand break-initiated SCE and DNA damage-associated SCE after exposure to X rays and chemical agents

Michael Fasullo, Zheng Dong, Mingzeng Sun, Li Zeng

DNA Repair (Amst) Author manuscript; available in PMC 2023 May 18.

Published in final edited form as: DNA Repair (Amst). 2005 Nov 21; 4(11): 1240–1251. Published online 2005 Jul 21. doi: 10.1016/j.dnarep.2005.06.006

PMCID:: PMC10195025

Abstract Article PDF–714K

Select item 92098117.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 86330988.

Rad9-mediated checkpoint activation is responsible for elevated expansions of GAA repeats in CST-deficient yeast

Ekaterina Spivakovsky-Gonzalez, Erica J Polleys, Chiara Masnovo, Jorge Cebrian, Adrian M Molina-Vargas, Catherine H Freudenreich, Sergei M Mirkin

Genetics. 2021 Oct; 219(2): iyab125. Published online 2021 Aug 6. doi: 10.1093/genetics/iyab125

PMCID:: PMC8633098

Abstract Article PDF–862K

Select item 85616359.

A regulatory phosphorylation site on Mec1 controls chromatin occupancy of RNA polymerases during replication stress

Verena Hurst, Kiran Challa, Felix Jonas, Romain Forey, Ragna Sack, Jan Seebacher, Christoph D Schmid, Naama Barkai, Kenji Shimada, Susan M Gasser, Jérôme Poli

EMBO J. 2021 Nov 2; 40(21): e108439. Published online 2021 Sep 27. doi: 10.15252/embj.2021108439

PMCID:: PMC8561635

Abstract Article PDF–6.1M

Select item 855165410.

Replication stress inhibits synthesis of histone mRNAs in yeast by removing Spt10p and Spt21p from the histone promoters

Madhura Bhagwat, Shreya Nagar, Pritpal Kaur, Riddhi Mehta, Ivana Vancurova, Ales Vancura

J Biol Chem. 2021 Nov; 297(5): 101246. Published online 2021 Sep 25. doi: 10.1016/j.jbc.2021.101246

PMCID:: PMC8551654

Abstract Article PDF–3.5M

Select item 846386411.

A mechanism for Rad53 to couple leading- and lagging-strand DNA synthesis under replication stress in budding yeast

Albert Serra-Cardona, Chuanhe Yu, Xinmin Zhang, Xu Hua, Yuan Yao, Jiaqi Zhou, Haiyun Gan, Zhiguo Zhang

Proc Natl Acad Sci U S A. 2021 Sep 21; 118(38): e2109334118. Published online 2021 Sep 16. doi: 10.1073/pnas.2109334118

PMCID:: PMC8463864

Abstract Article PDF–1.7M

Select item 830781012.

Genetic Analysis of the Hsm3 Protein Function in Yeast Saccharomyces cerevisiae NuB4 Complex

Tatiyana A. Evstyukhina, Elena A. Alekseeva, Dmitriy V. Fedorov, Vyacheslav T. Peshekhonov, Vladimir G. Korolev

Genes (Basel) 2021 Jul; 12(7): 1083. Published online 2021 Jul 17. doi: 10.3390/genes12071083

PMCID:: PMC8307810

Abstract Article PDF–2.6M

Select item 823765213.

Rtt105 promotes high-fidelity DNA replication and repair by regulating the single-stranded DNA-binding factor RPA

Xuejie Wang, Yang Dong, Xiaocong Zhao, Jinbao Li, Jordan Lee, Zhenxin Yan, Shuangshuang Yang, Wenqiang Wu, Ximiao Hou, Guangxue Liu, Yueyue Zhang, Lun Song, Gang Cai, Qing Li, Grzegorz Ira, Xinghua Zhang, Xuefeng Chen

Proc Natl Acad Sci U S A. 2021 Jun 22; 118(25): e2106393118. Published online 2021 Jun 17. doi: 10.1073/pnas.2106393118

PMCID:: PMC8237652

Abstract Article PDF–2.5M

Select item 788674614.

Participation of the HIM1 gene of yeast Saccharomyces cerevisiae in the error-free branch of post-replicative repair and role Polη in him1-dependent mutagenesis

E. A. Alekseeva, T. A. Evstyukhina, V. T. Peshekhonov, V. G. Korolev

Curr Genet. 2021; 67(1): 141–151. Published online 2020 Oct 31. doi: 10.1007/s00294-020-01115-6

PMCID:: PMC7886746

Abstract Article PDF–2.1M

Select item 786153115.

Limiting DNA polymerase delta alters replication dynamics and leads to a dependence on checkpoint activation and recombination-mediated DNA repair

Natasha C. Koussa, Duncan J. Smith

PLoS Genet. 2021 Jan; 17(1): e1009322. Published online 2021 Jan 25. doi: 10.1371/journal.pgen.1009322

PMCID:: PMC7861531

Abstract Article PDF–1.9M

Select item 771875116.

Comprehensive Synthetic Genetic Array Analysis of Alleles That Interact with Mutation of the Saccharomyces cerevisiae RecQ Helicases Hrq1 and Sgs1

Elsbeth Sanders, Phoebe A. Nguyen, Cody M. Rogers, Matthew L. Bochman

G3 (Bethesda) 2020 Dec; 10(12): 4359–4368. Published online 2020 Oct 28. doi: 10.1534/g3.120.401709

PMCID:: PMC7718751

Abstract Article PDF–1.2M

Select item 747094717.

Dual roles of yeast Rad51 N-terminal domain in repairing DNA double-strand breaks

Tai-Ting Woo, Chi-Ning Chuang, Mika Higashide, Akira Shinohara, Ting-Fang Wang

Nucleic Acids Res. 2020 Sep 4; 48(15): 8474–8489. Published online 2020 Jul 11. doi: 10.1093/nar/gkaa587

PMCID:: PMC7470947

Abstract Article PDF–11M

Select item 743848618.

The Rad53^CHK1/CHK2-Spt21^NPAT and Tel1^ATM axes couple glucose tolerance to histone dosage and subtelomeric silencing

Christopher Bruhn, Arta Ajazi, Elisa Ferrari, Michael Charles Lanz, Renaud Batrin, Ramveer Choudhary, Adhish Walvekar, Sunil Laxman, Maria Pia Longhese, Emmanuelle Fabre, Marcus Bustamente Smolka, Marco Foiani

Nat Commun. 2020; 11: 4154. Published online 2020 Aug 19. doi: 10.1038/s41467-020-17961-4