PMC Links for GEO Profiles (Select 546175) - PMC

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 84212045.

Investigation of RNA metabolism through large-scale genetic interaction profiling in yeast

Laurence Decourty, Christophe Malabat, Emmanuel Frachon, Alain Jacquier, Cosmin Saveanu

Nucleic Acids Res. 2021 Sep 7; 49(15): 8535–8555. Published online 2021 Aug 6. doi: 10.1093/nar/gkab680

PMCID:: PMC8421204

Abstract Article PDF–2.9M

Select item 77187516.

Comprehensive Synthetic Genetic Array Analysis of Alleles That Interact with Mutation of the Saccharomyces cerevisiae RecQ Helicases Hrq1 and Sgs1

Elsbeth Sanders, Phoebe A. Nguyen, Cody M. Rogers, Matthew L. Bochman

G3 (Bethesda) 2020 Dec; 10(12): 4359–4368. Published online 2020 Oct 28. doi: 10.1534/g3.120.401709

PMCID:: PMC7718751

Abstract Article PDF–1.2M

Select item 73390227.

Decrypting the Information Exchange Pathways across the Spliceosome Machinery

Andrea Saltalamacchia, Lorenzo Casalino, Jure Borišek, Victor S. Batista, Ivan Rivalta, Alessandra Magistrato

J Am Chem Soc. Author manuscript; available in PMC 2020 Jul 7.

Published in final edited form as: J Am Chem Soc. 2020 May 6; 142(18): 8403–8411. Published online 2020 Apr 22. doi: 10.1021/jacs.0c02036

PMCID:: PMC7339022

Abstract Article PDF–1.8M

Select item 70859328.

Transfer of the Septin Ring to Cytokinetic Remnants in ER stress Directs Age-Sensitive Cell Cycle Re-entry

Jesse T. Chao, Francisco Piña, Masayuki Onishi, Yifat Cohen, Ya-Shiuan Lai, Maya Schuldiner, Maho Niwa

Dev Cell. Author manuscript; available in PMC 2020 Oct 21.

Published in final edited form as: Dev Cell. 2019 Oct 21; 51(2): 173–191.e5. Published online 2019 Sep 26. doi: 10.1016/j.devcel.2019.08.017

PMCID:: PMC7085932

Abstract Article PDF–2.5M

Select item 62157139.

Systematic Analysis of Complex Genetic Interactions

Elena Kuzmin, Benjamin VanderSluis, Wen Wang, Guihong Tan, Raamesh Deshpande, Yiqun Chen, Matej Usaj, Attila Balint, Mojca Mattiazzi Usaj, Jolanda van Leeuwen, Elizabeth N. Koch, Carles Pons, Andrius J. Dagilis, Michael Pryszlak, Jason Zi Yang Wang, Julia Hanchard, Margot Riggi, Kaicong Xu, Hamed Heydari, Bryan-Joseph San Luis, Ermira Shuteriqi, Hongwei Zhu, Nydia Van Dyk, Sara Sharifpoor, Michael Costanzo, Robbie Loewith, Amy Caudy, Daniel Bolnick, Grant W. Brown, Brenda J. Andrews, Charles Boone, Chad L. Myers

Science. Author manuscript; available in PMC 2018 Nov 4.

Published in final edited form as: Science. 2018 Apr 20; 360(6386): eaao1729. doi: 10.1126/science.aao1729

PMCID:: PMC6215713

Abstract Article PDF–1.9M

Select item 582801210.

Structure of the yeast spliceosomal post-catalytic P complex

Shiheng Liu, Xueni Li, Lingdi Zhang, Jiansen Jiang, Ryan C. Hill, Yanxiang Cui, Kirk C. Hansen, Z. Hong Zhou, Rui Zhao

Science. Author manuscript; available in PMC 2018 Feb 27.

Published in final edited form as: Science. 2017 Dec 8; 358(6368): 1278–1283. Published online 2017 Nov 16. doi: 10.1126/science.aar3462

PMCID:: PMC5828012

Abstract Article PDF–976K

Select item 576535911.

Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4

Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese

G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415

PMCID:: PMC5765359

Abstract Article PDF–2.2M

Select item 566188512.

A global interaction network maps a wiring diagram of cellular function

Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone

Science. Author manuscript; available in PMC 2017 Oct 30.

Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420

PMCID:: PMC5661885

Abstract Article PDF–2.6M

Select item 560025413.

The Genetic Landscape of a Cell

Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone

Science. Author manuscript; available in PMC 2017 Sep 15.

Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823

PMCID:: PMC5600254

Abstract Article PDF–2.4M

Select item 541171014.

The histone variant H2A.Z promotes efficient cotranscriptional splicing in S. cerevisiae

Lauren T. Neves, Stephen Douglass, Roberto Spreafico, Srivats Venkataramanan, Tracy L. Kress, Tracy L. Johnson

Genes Dev. 2017 Apr 1; 31(7): 702–717. doi: 10.1101/gad.295188.116

PMCID:: PMC5411710

Abstract Article PDF–1.3M

Select item 532157915.

Structure of a spliceosome remodelled for exon ligation

Sebastian M. Fica, Chris Oubridge, Wojciech P. Galej, Max E. Wilkinson, Xiao-Chen Bai, Andrew J. Newman, Kiyoshi Nagai

Nature. Author manuscript; available in PMC 2017 Jul 11.

Published in final edited form as: Nature. 2017 Feb 16; 542(7641): 377–380. Published online 2017 Jan 11. doi: 10.1038/nature21078

PMCID:: PMC5321579

Abstract Article PDF–5.6M

Select item 498689716.

A protein map of the yeast activated spliceosome as obtained by electron microscopy

Chengfu Sun, Norbert Rigo, Patrizia Fabrizio, Berthold Kastner, Reinhard Lührmann

RNA. 2016 Sep; 22(9): 1427–1440. doi: 10.1261/rna.057778.116

PMCID:: PMC4986897

Abstract Article PDF–1.3M

Select item 461603917.

Integrated multi-omics analyses reveal the pleiotropic nature of the control of gene expression by Puf3p

Christopher J. Kershaw, Joseph L. Costello, David Talavera, William Rowe, Lydia M. Castelli, Paul F. G. Sims, Christopher M. Grant, Mark P. Ashe, Simon J. Hubbard, Graham D. Pavitt

Sci Rep. 2015; 5: 15518. Published online 2015 Oct 23. doi: 10.1038/srep15518

PMCID:: PMC4616039

Abstract Article PDF–2.2M

Select item 438106818.

Cwc21p promotes the second step conformation of the spliceosome and modulates 3′ splice site selection

Amit Gautam, Richard J. Grainger, J. Vilardell, J. David Barrass, Jean D. Beggs

Nucleic Acids Res. 2015 Mar 31; 43(6): 3309–3317. Published online 2015 Mar 3. doi: 10.1093/nar/gkv159

PMCID:: PMC4381068

Abstract Article PDF–1.8M

Select item 400567219.

Sumoylation of the THO complex regulates the biogenesis of a subset of mRNPs

Hugo Bretes, Jérôme O. Rouviere, Thibaut Leger, Marlene Oeffinger, Frédéric Devaux, Valérie Doye, Benoit Palancade

Nucleic Acids Res. 2014 Apr; 42(8): 5043–5058. Published online 2014 Feb 5. doi: 10.1093/nar/gku124

PMCID:: PMC4005672

Abstract Article PDF–8.1M

Select item 351004420.

The Yeast SR-Like Protein Npl3 Links Chromatin Modification to mRNA Processing

Erica A. Moehle, Colm J. Ryan, Nevan J. Krogan, Tracy L. Kress, Christine Guthrie

PLoS Genet. 2012 Nov; 8(11): e1003101. Published online 2012 Nov 29. doi: 10.1371/journal.pgen.1003101

PMCID:: PMC3510044

Abstract Article PDF–3.4M

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