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Items: 1 to 20 of 30

1.
A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon
Nir Cohen, Naama Aviram, Maya Schuldiner
EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385
PMCID:
PMC10233368
AbstractArticlePDF–1.2M
2.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
3.
Comprehensive Synthetic Genetic Array Analysis of Alleles That Interact with Mutation of the Saccharomyces cerevisiae RecQ Helicases Hrq1 and Sgs1
Elsbeth Sanders, Phoebe A. Nguyen, Cody M. Rogers, Matthew L. Bochman
G3 (Bethesda) 2020 Dec; 10(12): 4359–4368. Published online 2020 Oct 28. doi: 10.1534/g3.120.401709
PMCID:
PMC7718751
AbstractArticlePDF–1.2M
4.
Optimal Design of Single-Cell Experiments within Temporally Fluctuating Environments
Zachary R Fox, Gregor Neuert, Brian Munsky
Complexity. Author manuscript; available in PMC 2020 Sep 24.
Published in final edited form as: Complexity. 2020; 2020: 8536365. Published online 2020 Jun 13. doi: 10.1155/2020/8536365
PMCID:
PMC7515449
AbstractArticlePDF–2.0M
5.
Single-particle imaging of stress-promoters induction reveals the interplay between MAPK signaling, chromatin and transcription factors
Victoria Wosika, Serge Pelet
Nat Commun. 2020; 11: 3171. Published online 2020 Jun 23. doi: 10.1038/s41467-020-16943-w
PMCID:
PMC7311541
AbstractArticlePDF–2.8M
6.
Multiplex RNA single molecule FISH of inducible mRNAs in single yeast cells
Guoliang Li, Gregor Neuert
Sci Data. 2019; 6: 94. Published online 2019 Jun 17. doi: 10.1038/s41597-019-0106-6
PMCID:
PMC6572782
AbstractArticlePDF–4.0M
7.
The Lsm1-7/Pat1 complex binds to stress-activated mRNAs and modulates the response to hyperosmotic shock
Elena Garre, Vicent Pelechano, Manuel Sánchez del Pino, Paula Alepuz, Per Sunnerhagen
PLoS Genet. 2018 Jul; 14(7): e1007563. Published online 2018 Jul 30. doi: 10.1371/journal.pgen.1007563
PMCID:
PMC6085073
AbstractArticlePDF–4.3M
8.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
9.
The Genetic Landscape of a Cell
Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Sep 15.
Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823
PMCID:
PMC5600254
AbstractArticlePDF–2.4M
10.
Comprehensive and quantitative mapping of RNA–protein interactions across a transcribed eukaryotic genome
Richard She, Anupam K. Chakravarty, Curtis J. Layton, Lauren M. Chircus, Johan O. L. Andreasson, Nandita Damaraju, Peter L. McMahon, Jason D. Buenrostro, Daniel F. Jarosz, William J. Greenleaf
Proc Natl Acad Sci U S A. 2017 Apr 4; 114(14): 3619–3624. Published online 2017 Mar 21. doi: 10.1073/pnas.1618370114
PMCID:
PMC5389288
AbstractArticlePDF–1.3M
11.
Functional characterisation of long intergenic non-coding RNAs through genetic interaction profiling in Saccharomyces cerevisiae
Dimitris Kyriakou, Emmanouil Stavrou, Panayiota Demosthenous, Georgia Angelidou, Bryan-Joseph San Luis, Charles Boone, Vasilis J. Promponas, Antonis Kirmizis
BMC Biol. 2016; 14: 106. Published online 2016 Dec 7. doi: 10.1186/s12915-016-0325-7
PMCID:
PMC5142380
AbstractArticlePDF–1.2M
12.
One library to make them all: Streamlining yeast library creation by a SWAp-Tag (SWAT) strategy
Ido Yofe, Uri Weill, Matthias Meurer, Silvia Chuartzman, Einat Zalckvar, Omer Goldman, Shifra Ben-Dor, Conny Schütze, Nils Wiedemann, Michael Knop, Anton Khmelinskii, Maya Schuldiner
Nat Methods. Author manuscript; available in PMC 2016 Sep 22.
Published in final edited form as: Nat Methods. 2016 Apr; 13(4): 371–378. Published online 2016 Feb 29. doi: 10.1038/nmeth.3795
PMCID:
PMC4869835
AbstractArticlePDF–2.7M
13.
Real-time quantification of protein expression at the single-cell level via dynamic protein synthesis translocation reporters
Delphine Aymoz, Victoria Wosika, Eric Durandau, Serge Pelet
Nat Commun. 2016; 7: 11304. Published online 2016 Apr 21. doi: 10.1038/ncomms11304
PMCID:
PMC4844680
AbstractArticlePDF–2.7M
14.
Alternative Glycerol Balance Strategies among Saccharomyces Species in Response to Winemaking Stress
Roberto Pérez-Torrado, Bruno M. Oliveira, Jana Zemančíková, Hana Sychrová, Amparo Querol
Front Microbiol. 2016; 7: 435. Published online 2016 Mar 31. doi: 10.3389/fmicb.2016.00435
PMCID:
PMC4814467
AbstractArticlePDF–5.5M
15.
Saccharomyces cerevisiae Is Dependent on Vesicular Traffic between the Golgi Apparatus and the Vacuole When Inositolphosphorylceramide Synthase Aur1 Is Inactivated
Natalia S. Voynova, Carole Roubaty, Hector M. Vazquez, Shamroop K. Mallela, Christer S. Ejsing, Andreas Conzelmann
Eukaryot Cell. 2015 Dec; 14(12): 1203–1216. Prepublished online 2015 Oct 2. Published online 2015 Nov 30. doi: 10.1128/EC.00117-15
PMCID:
PMC4664882
AbstractArticlePDF–2.3M
16.
The yeast Hot1 transcription factor is critical for activating a single target gene, STL1
Chen Bai, Masha Tesker, David Engelberg
Mol Biol Cell. 2015 Jun 15; 26(12): 2357–2374. doi: 10.1091/mbc.E14-12-1626
PMCID:
PMC4462951
AbstractArticlePDF–1.7M
17.
Re-evaluation of glycerol utilization in Saccharomyces cerevisiae: characterization of an isolate that grows on glycerol without supporting supplements
Steve Swinnen, Mathias Klein, Martina Carrillo, Joseph McInnes, Huyen Thi Thanh Nguyen, Elke Nevoigt
Biotechnol Biofuels. 2013; 6: 157. Published online 2013 Nov 8. doi: 10.1186/1754-6834-6-157
PMCID:
PMC3835864
AbstractArticlePDF–713K
18.
Systematic Identification of Signal-Activated Stochastic Gene Regulation
Gregor Neuert, Brian Munsky, Rui Zhen Tan, Leonid Teytelman, Mustafa Khammash, Alexander van Oudenaarden
Science. Author manuscript; available in PMC 2014 Feb 1.
Published in final edited form as: Science. 2013 Feb 1; 339(6119): 584–587. doi: 10.1126/science.1231456
PMCID:
PMC3751578
AbstractArticlePDF–2.1M
19.
Quantitative Analysis of Glycerol Accumulation, Glycolysis and Growth under Hyper Osmotic Stress
Elzbieta Petelenz-Kurdziel, Clemens Kuehn, Bodil Nordlander, Dagmara Klein, Kuk-Ki Hong, Therese Jacobson, Peter Dahl, Jörg Schaber, Jens Nielsen, Stefan Hohmann, Edda Klipp
PLoS Comput Biol. 2013 Jun; 9(6): e1003084. Published online 2013 Jun 6. doi: 10.1371/journal.pcbi.1003084
Correction in:
PLoS Comput Biol. 2014 May; 10(5): e1003663.
PMCID:
PMC3677637
AbstractArticlePDF–1010K
20.
Expression and functional studies of genes involved in transport and metabolism of glycerol in Pachysolen tannophilus
Xiaoying Liu, Uffe Hasbro Mortensen, Mhairi Workman
Microb Cell Fact. 2013; 12: 27. Published online 2013 Mar 21. doi: 10.1186/1475-2859-12-27
PMCID:
PMC3610204
AbstractArticlePDF–656K

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