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Items: 1 to 20 of 28

1.
Stochastic Modeling of Gene Expression Evolution Uncovers Tissue- and Sex-Specific Properties of Expression Evolution in the Drosophila Genus
Soumitra Pal, Brian Oliver, Teresa M. Przytycka
J Comput Biol. January 2023; 30(1): 21–40. Published online 2023 Jan 5. doi: 10.1089/cmb.2022.0121
PMCID:
PMC9917317
AbstractArticlePDF–1.0M
2.
The 40-Year Mystery of Insect Odorant-Binding Proteins
Karen Rihani, Jean-François Ferveur, Loïc Briand
Biomolecules. 2021 Apr; 11(4): 509. Published online 2021 Mar 30. doi: 10.3390/biom11040509
PMCID:
PMC8067015
AbstractArticlePDF–12M
3.
Chemosensory sensilla of the Drosophila wing express a candidate ionotropic pheromone receptor
Zhe He, Yichen Luo, Xueying Shang, Jennifer S. Sun, John R. Carlson
PLoS Biol. 2019 May; 17(5): e2006619. Published online 2019 May 21. doi: 10.1371/journal.pbio.2006619
PMCID:
PMC6528970
AbstractArticlePDF–3.0M
4.
Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species
Piero Sanfilippo, Jiayu Wen, Eric C. Lai
Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0
PMCID:
PMC5707805
AbstractArticlePDF–3.2M
5.
Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster
Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira
RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117
PMCID:
PMC5689002
AbstractArticlePDF–4.0M
6.
Gene Model Annotations for Drosophila melanogaster: The Rule-Benders
Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937
PMCID:
PMC4528330
AbstractArticlePDF–2.2M
7.
Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data
Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929
PMCID:
PMC4528329
AbstractArticlePDF–4.9M
8.
The Release 6 reference sequence of the Drosophila melanogaster genome
Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker
Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114
PMCID:
PMC4352887
AbstractArticlePDF–1022K
9.
Phylostratigraphic Bias Creates Spurious Patterns of Genome Evolution
Bryan A. Moyers, Jianzhi Zhang
Mol Biol Evol. 2015 Jan 1; 32(1): 258–267. Published online 2014 Oct 13. doi: 10.1093/molbev/msu286
Correction in:
Mol Biol Evol. 2016 Nov; 33(11): 3031.
PMCID:
PMC4271527
AbstractArticlePDF–618K
10.
Modulation of Feeding Behavior by Odorant-Binding Proteins in Drosophila melanogaster
Shilpa Swarup, Tatiana V. Morozova, Sruthipriya Sridhar, Michael Nokes, Robert R.H. Anholt
Chem Senses. 2014 Feb; 39(2): 125–132. Published online 2013 Dec 3. doi: 10.1093/chemse/bjt061
PMCID:
PMC3894858
AbstractArticlePDF–1.1M
11.
Uncovering the Functional Constraints Underlying the Genomic Organization of the Odorant-Binding Protein Genes
Pablo Librado, Julio Rozas
Genome Biol Evol. 2013; 5(11): 2096–2108. Published online 2013 Oct 21. doi: 10.1093/gbe/evt158
PMCID:
PMC3845639
AbstractArticlePDF–835K
12.
High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression
Philippe Batut, Alexander Dobin, Charles Plessy, Piero Carninci, Thomas R. Gingeras
Genome Res. 2013 Jan; 23(1): 169–180. doi: 10.1101/gr.139618.112
PMCID:
PMC3530677
AbstractArticlePDF–1.5M
13.
The Many Landscapes of Recombination in Drosophila melanogaster
Josep M. Comeron, Ramesh Ratnappan, Samuel Bailin
PLoS Genet. 2012 Oct; 8(10): e1002905. Published online 2012 Oct 11. doi: 10.1371/journal.pgen.1002905
PMCID:
PMC3469467
AbstractArticlePDF–1.6M
14.
Evolution of Gene Expression in the Drosophila Olfactory System
Artyom Kopp, Olga Barmina, Andrew M. Hamilton, Laura Higgins, Lauren M. McIntyre, Corbin D. Jones
Mol Biol Evol. 2008 Jun; 25(6): 1081–1092. Published online 2008 Feb 23. doi: 10.1093/molbev/msn055
PMCID:
PMC3299402
AbstractArticle
15.
Functional dissection of Odorant binding protein genes in Drosophila melanogaster
S Swarup, T I Williams, R R H Anholt
Genes Brain Behav. 2011 Aug; 10(6): 648–657. Published online 2011 Jun 14. doi: 10.1111/j.1601-183X.2011.00704.x
PMCID:
PMC3150612
AbstractArticlePDF–1.2M
16.
Comparative Genomics of the Odorant-Binding and Chemosensory Protein Gene Families across the Arthropoda: Origin and Evolutionary History of the Chemosensory System
Filipe G. Vieira, Julio Rozas
Genome Biol Evol. 2011; 3: 476–490. Published online 2011 Apr 28. doi: 10.1093/gbe/evr033
PMCID:
PMC3134979
AbstractArticlePDF–1.4M
17.
Sequence Finishing and Mapping of Drosophila melanogaster Heterochromatin
Roger A. Hoskins, Joseph W. Carlson, Cameron Kennedy, David Acevedo, Martha Evans-Holm, Erwin Frise, Kenneth H. Wan, Soo Park, Maria Mendez-Lago, Fabrizio Rossi, Alfredo Villasante, Patrizio Dimitri, Gary H. Karpen, Susan E. Celniker
Science. Author manuscript; available in PMC 2010 Feb 19.
Published in final edited form as: Science. 2007 Jun 15; 316(5831): 1625–1628. doi: 10.1126/science.1139816
PMCID:
PMC2825053
AbstractArticlePDF–858K
18.
The Release 5.1 Annotation of Drosophila melanogaster Heterochromatin
Christopher D. Smith, ShengQiang Shu, Christopher J. Mungall, Gary H. Karpen
Science. Author manuscript; available in PMC 2010 Feb 10.
Published in final edited form as: Science. 2007 Jun 15; 316(5831): 1586. doi: 10.1126/science.1139815
Correction in:
volume 317 on page 1325
PMCID:
PMC2819280
AbstractArticlePDF–1.3M
19.
Plasticity of the Chemoreceptor Repertoire in Drosophila melanogaster
Shanshan Zhou, Eric A. Stone, Trudy F. C. Mackay, Robert R. H. Anholt
PLoS Genet. 2009 Oct; 5(10): e1000681. Published online 2009 Oct 9. doi: 10.1371/journal.pgen.1000681
PMCID:
PMC2750752
AbstractArticlePDF–883K
20.
Comparative genomic analysis of the odorant-binding protein family in 12 Drosophila genomes: purifying selection and birth-and-death evolution
Filipe G Vieira, Alejandro Sánchez-Gracia, Julio Rozas
Genome Biol. 2007; 8(11): R235. Published online 2007 Nov 8. doi: 10.1186/gb-2007-8-11-r235
PMCID:
PMC2258175
AbstractArticlePDF–1.4M

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