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Select item 107001381.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 99950772.

The TORC1 activates Rpd3L complex to deacetylate Ino80 and H2A.Z and repress autophagy

Xin Li, Qianyun Mei, Qi Yu, Min Wang, Fei He, Duncheng Xiao, Huan Liu, Feng Ge, Xilan Yu, Shanshan Li

Sci Adv. 2023 Mar; 9(10): eade8312. Published online 2023 Mar 8. doi: 10.1126/sciadv.ade8312

PMCID:: PMC9995077

Abstract Article PDF–2.7M

Select item 94789283.

Transcriptional regulator Taf14 binds DNA and is required for the function of transcription factor TFIID in the absence of histone H2A.Z

Kadri Peil, Signe Värv, Ivar Ilves, Kersti Kristjuhan, Henel Jürgens, Arnold Kristjuhan

J Biol Chem. 2022 Sep; 298(9): 102369. Published online 2022 Aug 13. doi: 10.1016/j.jbc.2022.102369

PMCID:: PMC9478928

Abstract Article PDF–1.0M

Select item 92098114.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 89346515.

Yeast Ssd1 is a non-enzymatic member of the RNase II family with an alternative RNA recognition site

Rosemary A Bayne, Uma Jayachandran, Aleksandra Kasprowicz, Stefan Bresson, David Tollervey, Edward W J Wallace, Atlanta G Cook

Nucleic Acids Res. 2022 Mar 21; 50(5): 2923–2937. Published online 2021 Jul 24. doi: 10.1093/nar/gkab615

PMCID:: PMC8934651

Abstract Article PDF–4.4M

Select item 75602166.

AP‐3 vesicle uncoating occurs after HOPS‐dependent vacuole tethering

Jannis Schoppe, Muriel Mari, Erdal Yavavli, Kathrin Auffarth, Margarita Cabrera, Stefan Walter, Florian Fröhlich, Christian Ungermann

EMBO J. 2020 Oct 15; 39(20): e105117. Published online 2020 Aug 25. doi: 10.15252/embj.2020105117

PMCID:: PMC7560216

Abstract Article PDF–3.6M

Select item 71086667.

Mechanism of Long-Range Chromosome Motion Triggered by Gene Activation

Anqi Wang, Janhavi Kolhe, Nate Gioacchini, Imke Baade, William M. Brieher, Craig L. Peterson, Brian C. Freeman

Dev Cell. Author manuscript; available in PMC 2021 Feb 10.

Published in final edited form as: Dev Cell. 2020 Feb 10; 52(3): 309–320.e5. Published online 2020 Jan 2. doi: 10.1016/j.devcel.2019.12.007

PMCID:: PMC7108666

Abstract Article PDF–1.1M

Select item 70414908.

Thermosensitive Nucleosome Editing Reveals the Role of DNA Sequence in Targeted Histone Variant Deposition

Lu Sun, Leonidas Pierrakeas, Tailai Li, Ed Luk

Cell Rep. Author manuscript; available in PMC 2020 Feb 25.

Published in final edited form as: Cell Rep. 2020 Jan 7; 30(1): 257–268.e5. doi: 10.1016/j.celrep.2019.12.006

PMCID:: PMC7041490

Abstract Article PDF–2.4M

Select item 69164809.

The ribosome assembly factor Nop53 controls association of the RNA exosome with pre-60S particles in yeast

Leidy Paola P. Cepeda, Felipe F. M. Bagatelli, Renata M. Santos, Marlon D. M. Santos, Fabio C. S. Nogueira, Carla C. Oliveira

J Biol Chem. 2019 Dec 13; 294(50): 19365–19380. Published online 2019 Oct 29. doi: 10.1074/jbc.RA119.010193

PMCID:: PMC6916480

Abstract Article PDF–5.0M

Select item 654834310.

Structure and functional interactions of INO80 actin/Arp module

Xuan Zhang, Xuejuan Wang, Zhihui Zhang, Gang Cai

J Mol Cell Biol. 2019 May; 11(5): 345–355. Published online 2018 Nov 2. doi: 10.1093/jmcb/mjy062

PMCID:: PMC6548343

Abstract Article PDF–28M

Select item 609815811.

The Arp8 and Arp4 module acts as a DNA sensor controlling INO80 chromatin remodeling

Sandipan Brahma, Mzwanele Ngubo, Somnath Paul, Maheshi Udugama, Blaine Bartholomew

Nat Commun. 2018; 9: 3309. Published online 2018 Aug 17. doi: 10.1038/s41467-018-05710-7

PMCID:: PMC6098158

Abstract Article PDF–2.0M

Select item 602853812.

The budding yeast RSC complex maintains ploidy by promoting spindle pole body insertion

Tina L. Sing, Minnie P. Hung, Shinsuke Ohnuki, Godai Suzuki, Bryan-Joseph San Luis, Melainia McClain, Jay R. Unruh, Zulin Yu, Jiongwen Ou, Jesse Marshall-Sheppard, Won-Ki Huh, Michael Costanzo, Charles Boone, Yoshikazu Ohya, Sue L. Jaspersen, Grant W. Brown

J Cell Biol. 2018 Jul 2; 217(7): 2445–2462. doi: 10.1083/jcb.201709009

PMCID:: PMC6028538

Abstract Article PDF–2.8M

Select item 594018013.

Network inference reveals novel connections in pathways regulating growth and defense in the yeast salt response

Matthew E. MacGilvray, Evgenia Shishkova, Deborah Chasman, Michael Place, Anthony Gitter, Joshua J. Coon, Audrey P. Gasch

PLoS Comput Biol. 2018 May; 13(5): e1006088. Published online 2018 May 8. doi: 10.1371/journal.pcbi.1006088

PMCID:: PMC5940180

Abstract Article PDF–3.0M

Select item 583420614.

The INO80 chromatin remodeler sustains metabolic stability by promoting TOR signaling and regulating histone acetylation

Sean L. Beckwith, Erin K. Schwartz, Pablo E. García-Nieto, Devin A. King, Graeme J. Gowans, Ka Man Wong, Tessa L. Eckley, Alexander P. Paraschuk, Egan L. Peltan, Laura R. Lee, Wei Yao, Ashby J. Morrison

PLoS Genet. 2018 Feb; 14(2): e1007216. Published online 2018 Feb 20. doi: 10.1371/journal.pgen.1007216

PMCID:: PMC5834206

Abstract Article PDF–17M

Select item 564803215.

Architecture and dynamics of overlapped RNA regulatory networks

Christopher P. Lapointe, Melanie A. Preston, Daniel Wilinski, Harriet A.J. Saunders, Zachary T. Campbell, Marvin Wickens

RNA. 2017 Nov; 23(11): 1636–1647. doi: 10.1261/rna.062687.117

PMCID:: PMC5648032

Abstract Article PDF–6.6M

Select item 534104116.

Identification of Topological Network Modules in Perturbed Protein Interaction Networks

Mihaela E. Sardiu, Joshua M. Gilmore, Brad Groppe, Laurence Florens, Michael P. Washburn

Sci Rep. 2017; 7: 43845. Published online 2017 Mar 8. doi: 10.1038/srep43845

PMCID:: PMC5341041

Abstract Article PDF–1.7M

Select item 524091717.

Genomic nucleosome organization reconstituted with pure proteins

Nils Krietenstein, Megha Wal, Shinya Watanabe, Bongsoo Park, Craig L. Peterson, B. Franklin Pugh, Philipp Korber

Cell. Author manuscript; available in PMC 2017 Oct 20.

Published in final edited form as: Cell. 2016 Oct 20; 167(3): 709–721.e12. doi: 10.1016/j.cell.2016.09.045

PMCID:: PMC5240917

Abstract Article PDF–5.6M

Select item 505508318.

Functional Metabolomics Describes the Yeast Biosynthetic Regulome

Michael Mülleder, Enrica Calvani, Mohammad Tauqeer Alam, Richard Kangda Wang, Florian Eckerstorfer, Aleksej Zelezniak, Markus Ralser

Cell. 2016 Oct 6; 167(2): 553–565.e12. doi: 10.1016/j.cell.2016.09.007

PMCID:: PMC5055083

Abstract Article PDF–3.9M

Select item 481371319.

Proteomic and Genomic Analyses of the Rvb1 and Rvb2 Interaction Network upon Deletion of R2TP Complex Components

Mahadevan Lakshminarasimhan, Gina Boanca, Charles A. S. Banks, Gaye L. Hattem, Ana E. Gabriel, Brad D. Groppe, Christine Smoyer, Kate E. Malanowski, Allison Peak, Laurence Florens, Michael P. Washburn

Mol Cell Proteomics. 2016 Mar; 15(3): 960–974. Published online 2016 Feb 1. doi: 10.1074/mcp.M115.053165