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Items: 1 to 20 of 38

1.
AAA+ protease-adaptor structures reveal altered conformations and ring specialization
Sora Kim, Xue Fei, Robert T. Sauer, Tania A. Baker
Nat Struct Mol Biol. 2022; 29(11): 1068–1079. Published online 2022 Nov 3. doi: 10.1038/s41594-022-00850-3
PMCID:
PMC9663308
AbstractArticlePDF–9.7M
2.
Division of labor between the pore-1 loops of the D1 and D2 AAA+ rings coordinates substrate selectivity of the ClpAP protease
Kristin L. Zuromski, Sora Kim, Robert T. Sauer, Tania A. Baker
J Biol Chem. 2021 Dec; 297(6): 101407. Published online 2021 Nov 12. doi: 10.1016/j.jbc.2021.101407
PMCID:
PMC8666677
AbstractArticlePDF–2.9M
3.
ClpAP proteolysis does not require rotation of the ClpA unfoldase relative to ClpP
Sora Kim, Kristin L Zuromski, Tristan A Bell, Robert T Sauer, Tania A Baker
eLife. 2020; 9: e61451. Published online 2020 Dec 1. doi: 10.7554/eLife.61451
PMCID:
PMC7707817
AbstractArticlePDF–2.5M
4.
Conformational Plasticity of the ClpAP AAA+ Protease Couples Protein Unfolding and Proteolysis
Kyle E. Lopez, Alexandrea N. Rizo, Eric Tse, JiaBei Lin, Nathaniel W. Scull, Aye C. Thwin, Aaron L. Lucius, James Shorter, Daniel R. Southworth
Nat Struct Mol Biol. Author manuscript; available in PMC 2020 Oct 1.
Published in final edited form as: Nat Struct Mol Biol. 2020 May; 27(5): 406–416. Published online 2020 Apr 20. doi: 10.1038/s41594-020-0409-5
PMCID:
PMC7529148
AbstractArticlePDF–3.1M
5.
ClpAP protease is a universal factor that activates the parDE toxin-antitoxin system from a broad host range RK2 plasmid
Andrzej Dubiel, Katarzyna Wegrzyn, Adam P. Kupinski, Igor Konieczny
Sci Rep. 2018; 8: 15287. Published online 2018 Oct 16. doi: 10.1038/s41598-018-33726-y
PMCID:
PMC6191456
AbstractArticlePDF–2.1M
6.
The binary protein-protein interaction landscape of Escherichia coli
Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz
Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.
Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831
PMCID:
PMC4123855
AbstractArticlePDF–1.1M
7.
Inferring gene function from evolutionary change in signatures of translation efficiency
Anita Krisko, Tea Copic, Toni Gabaldón, Ben Lehner, Fran Supek
Genome Biol. 2014; 15(3): R44. Published online 2014 Mar 3. doi: 10.1186/gb-2014-15-3-r44
PMCID:
PMC4054840
AbstractArticlePDF–2.2M
8.
A Second-generation Protein–Protein Interaction Network of Helicobacter pylori
Roman Häuser, Arnaud Ceol, Seesandra V. Rajagopala, Roberto Mosca, Gabriella Siszler, Nadja Wermke, Patricia Sikorski, Frank Schwarz, Matthias Schick, Stefan Wuchty, Patrick Aloy, Peter Uetz
Mol Cell Proteomics. 2014 May; 13(5): 1318–1329. Published online 2014 Mar 13. doi: 10.1074/mcp.O113.033571
PMCID:
PMC4014287
AbstractArticlePDF–2.2M
9.
ATPγS Competes with ATP for Binding at Domain 1 but not Domain 2 during ClpA Catalyzed Polypeptide Translocation
Justin M. Miller, Aaron L. Lucius
Biophys Chem. Author manuscript; available in PMC 2015 Jan 1.
Published in final edited form as: Biophys Chem. 2014 Jan; 185: 58–69. Published online 2013 Nov 13. doi: 10.1016/j.bpc.2013.11.002
PMCID:
PMC3966025
AbstractArticlePDF–2.5M
10.
E. coli ClpA Catalyzed Polypeptide Translocation Is Allosterically Controlled by the Protease ClpP
Justin M. Miller, Jiabei Lin, Tao Li, Aaron L. Lucius
J Mol Biol. Author manuscript; available in PMC 2014 Aug 9.
Published in final edited form as: J Mol Biol. 2013 Aug 9; 425(15): 2795–2812. Published online 2013 Apr 29. doi: 10.1016/j.jmb.2013.04.019
PMCID:
PMC3918674
AbstractArticlePDF–1.3M
11.
Synchrotron Protein Footprinting Supports Substrate Translocation by ClpA via ATP-Induced Movements of the D2 Loop
Jen Bohon, Laura D. Jennings, Christine M. Phillips, Stuart Licht, Mark R. Chance
Structure. Author manuscript; available in PMC 2010 Aug 30.
Published in final edited form as: Structure. 2008 Aug 6; 16(8): 1157–1165. doi: 10.1016/j.str.2008.04.016
PMCID:
PMC2929679
AbstractArticlePDF–2.2M
12.
Local and Global Mobility in the ClpA AAA+ Chaperone Detected by Cryo-electron Microscopy: Functional Connotations
Grégory Effantin, Takashi Ishikawa, Gian Marco De Donatis, Michael R. Maurizi, Alasdair C. Steven
Structure. Author manuscript; available in PMC 2011 May 12.
Published in final edited form as: Structure. 2010 May 12; 18(5): 553–562. doi: 10.1016/j.str.2010.02.016
PMCID:
PMC2871031
AbstractArticlePDF–3.0M
13.
A Single ClpS Monomer Is Sufficient to Direct the Activity of the ClpA Hexamer
Gian Marco De Donatis, Satyendra K. Singh, Sarada Viswanathan, Michael R. Maurizi
J Biol Chem. 2010 Mar 19; 285(12): 8771–8781. Published online 2010 Jan 12. doi: 10.1074/jbc.M109.053736
PMCID:
PMC2838299
AbstractArticlePDF–2.0M
14.
Proteolysis in the SOS response and metal homeostasis in Escherichia coli
Mihaela Pruteanu, Tania A. Baker
Res Microbiol. Author manuscript; available in PMC 2010 Nov 1.
Published in final edited form as: Res Microbiol. 2009 Nov; 160(9): 677–683. Published online 2009 Sep 10. doi: 10.1016/j.resmic.2009.08.012
PMCID:
PMC2783568
AbstractArticlePDF–341K
15.
Both ATPase Domains of ClpA Are Critical for Processing of Stable Protein Structures
Wolfgang Kress, Hannes Mutschler, Eilika Weber-Ban
J Biol Chem. 2009 Nov 6; 284(45): 31441–31452. Published online 2009 Sep 2. doi: 10.1074/jbc.M109.022319
PMCID:
PMC2781540
AbstractArticlePDF–2.6M
16.
ATP-dependent Proteases Differ Substantially in Their Ability to Unfold Globular Proteins
Prakash Koodathingal, Neil E. Jaffe, Daniel A. Kraut, Sumit Prakash, Susan Fishbain, Christophe Herman, Andreas Matouschek
J Biol Chem. 2009 Jul 10; 284(28): 18674–18684. Published online 2009 Apr 21. doi: 10.1074/jbc.M900783200
PMCID:
PMC2707231
AbstractArticlePDF–1.2M
17.
Modification of PATase by L/F-transferase generates a ClpS-dependent N-end rule substrate in Escherichia coli
Robert L Ninnis, Sukhdeep K Spall, Gert H Talbo, Kaye N Truscott, David A Dougan
EMBO J. 2009 Jun 17; 28(12): 1732–1744. Published online 2009 May 14. doi: 10.1038/emboj.2009.134
PMCID:
PMC2699360
AbstractArticlePDF–1.8M
18.
Tuning the Strength of a Bacterial N-end Rule Degradation Signal
Kevin H. Wang, Elizabeth S. C. Oakes, Robert T. Sauer, Tania A. Baker
J Biol Chem. 2008 Sep 5; 283(36): 24600–24607. doi: 10.1074/jbc.M802213200
PMCID:
PMC2528998
AbstractArticlePDF–728K
19.
Turnover of Endogenous SsrA-tagged Proteins Mediated by ATP-dependent Proteases in Escherichia coli
Mark Lies, Michael R. Maurizi
J Biol Chem. 2008 Aug 22; 283(34): 22918–22929. doi: 10.1074/jbc.M801692200
PMCID:
PMC2516991
AbstractArticlePDF–481K
20.
Characterization of the N-terminal repeat domain of Escherichia coli ClpA—A class I Clp/HSP100 ATPase
John H. Lo, Tania A. Baker, Robert T. Sauer
Protein Sci. 2001 Mar; 10(3): 551–559. doi: 10.1110/ps.41401
PMCID:
PMC2374137
AbstractArticlePDF–328K

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