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Items: 1 to 20 of 43

1.
Diversity of prokaryotic chromosomal proteins and the origin of the nucleosome
K. Sandman, S. L. Pereira, J. N. Reeve
Cell Mol Life Sci. 1998 Dec; 54(12): 1350–1364. doi: 10.1007/s000180050259
PMCID:
PMC11147202
ArticlePDF–893K
2.
Architecture of the Escherichia coli nucleoid
Subhash C. Verma, Zhong Qian, Sankar L. Adhya
PLoS Genet. 2019 Dec; 15(12): e1008456. Published online 2019 Dec 12. doi: 10.1371/journal.pgen.1008456
Correction in:
PLoS Genet. 2020 Oct; 16(10): e1009148.
PMCID:
PMC6907758
ArticlePDF–3.9M
3.
HU content and dynamics in Escherichia coli during the cell cycle and at different growth rates
Anteneh Hailu Abebe, Alexander Aranovich, Itzhak Fishov
FEMS Microbiol Lett. 2017 Oct; 364(19): fnx195. Published online 2017 Sep 12. doi: 10.1093/femsle/fnx195
PMCID:
PMC5827619
ArticlePDF–1.0M
4.
Optimized fragmentation schemes and data analysis strategies for proteome-wide cross-link identification
Fan Liu, Philip Lössl, Richard Scheltema, Rosa Viner, Albert J. R. Heck
Nat Commun. 2017; 8: 15473. Published online 2017 May 19. doi: 10.1038/ncomms15473
PMCID:
PMC5454533
ArticlePDF–1.5M
5.
HU multimerization shift controls nucleoid compaction
Michal Hammel, Dhar Amlanjyoti, Francis E. Reyes, Jian-Hua Chen, Rochelle Parpana, Henry Y. H. Tang, Carolyn A. Larabell, John A. Tainer, Sankar Adhya
Sci Adv. 2016 Jul; 2(7): e1600650. Published online 2016 Jul 29. doi: 10.1126/sciadv.1600650
PMCID:
PMC4966879
ArticlePDF–4.2M
6.
Genomic analysis of DNA binding and gene regulation by homologous nucleoid-associated proteins IHF and HU in Escherichia coli K12
Ana I. Prieto, Christina Kahramanoglou, Ruhi M. Ali, Gillian M. Fraser, Aswin S. N. Seshasayee, Nicholas M. Luscombe
Nucleic Acids Res. 2012 Apr; 40(8): 3524–3537. Published online 2011 Dec 16. doi: 10.1093/nar/gkr1236
PMCID:
PMC3333857
ArticlePDF–3.2M
7.
Conversion of Commensal Escherichia coli K-12 to an Invasive Form via Expression of a Mutant Histone-Like Protein
Preeti Koli, Sudhanshu Sudan, David Fitzgerald, Sankar Adhya, Sudeshna Kar
mBio. 2011 Sep-Oct; 2(5): e00182-11. Published online 2011 Sep 6. doi: 10.1128/mBio.00182-11
Correction in:
mBio. 2011 Nov-Dec; 2(6): e00263-11.
PMCID:
PMC3172693
ArticlePDF–2.9M
8.
Nonspecific DNA Binding and Bending by HUαβ: Interfaces of the Three Binding Modes Characterized by Salt Dependent Thermodynamics
Junseock Koh, Irina Shkel, Ruth M. Saecker, M. Thomas Record, Jr.
J Mol Biol. Author manuscript; available in PMC 2012 Jul 8.
Published in final edited form as: J Mol Biol. 2011 Jul 8; 410(2): 241–267. Published online 2011 Apr 12. doi: 10.1016/j.jmb.2011.04.001
PMCID:
PMC3115508
ArticlePDF–1.8M
9.
Two forms of ribosomal protein L2 of Escherichia coli that inhibit DnaA in DNA replication
Sundari Chodavarapu, Magdalena M. Felczak, Jon M. Kaguni
Nucleic Acids Res. 2011 May; 39(10): 4180–4191. Published online 2011 Feb 2. doi: 10.1093/nar/gkq1203
PMCID:
PMC3105425
ArticlePDF–1.4M
10.
Escherichia coli HU protein has a role in the repair of abasic sites in DNA
Yoke W. Kow, Barry Imhoff, Bernard Weiss, David C. I. Hung, Antreas A. Hindoyan, Randall M. Story, Steven D. Goodman
Nucleic Acids Res. 2009 Jun; 37(10): 3474. Published online 2009 May 19. doi: 10.1093/nar/gkp454
Retracts:
Nucleic Acids Res. 2007 Oct; 35(19): 6672–6680.
PMCID:
PMC2691850
RetractionPDF–35K
11.
Effects of the nucleoid protein HU on the structure, flexibility, and ring-closure properties of DNA deduced from Monte-Carlo simulations
Luke Czapla, David Swigon, Wilma K. Olson
J Mol Biol. Author manuscript; available in PMC 2009 May 8.
Published in final edited form as: J Mol Biol. 2008 Oct 3; 382(2): 353–370. Published online 2008 Jun 19. doi: 10.1016/j.jmb.2008.05.088
PMCID:
PMC2679585
ArticlePDF–2.8M
12.
DNA sampling: a method for probing protein binding at specific loci on bacterial chromosomes
Matej Butala, Stephen J. W. Busby, David J. Lee
Nucleic Acids Res. 2009 Apr; 37(5): e37. Published online 2009 Jan 30. doi: 10.1093/nar/gkp043
PMCID:
PMC2655658
ArticlePDF–4.3M
13.
DNA Binding Mode Transitions of Escherichia coli HUαβ: Evidence for Formation of a Bent DNA – Protein Complex on Intact, Linear Duplex DNA
Junseock Koh, Ruth M. Saecker, M. Thomas Record, Jr.
J Mol Biol. Author manuscript; available in PMC 2009 Nov 7.
Published in final edited form as: J Mol Biol. 2008 Nov 7; 383(2): 324–346. Published online 2008 Jul 16. doi: 10.1016/j.jmb.2008.07.024
PMCID:
PMC2649783
ArticlePDF–2.0M
14.
The HU Regulon Is Composed of Genes Responding to Anaerobiosis, Acid Stress, High Osmolarity and SOS Induction
Jacques Oberto, Sabrina Nabti, Valérie Jooste, Hervé Mignot, Josette Rouviere-Yaniv
PLoS One. 2009; 4(2): e4367. Published online 2009 Feb 4. doi: 10.1371/journal.pone.0004367
PMCID:
PMC2634741
ArticlePDF–2.4M
15.
Eukaryotic HMGB proteins as replacements for HU in E. coli repression loop formation
Nicole A. Becker, Jason D. Kahn, L. James Maher, III
Nucleic Acids Res. 2008 Jul; 36(12): 4009–4021. Published online 2008 May 31. doi: 10.1093/nar/gkn353
PMCID:
PMC2475640
ArticlePDF–1.4M
16.
Protein abundance profiling of the Escherichia coli cytosol
Yasushi Ishihama, Thorsten Schmidt, Juri Rappsilber, Matthias Mann, F Ulrich Hartl, Michael J Kerner, Dmitrij Frishman
BMC Genomics. 2008; 9: 102. Published online 2008 Feb 27. doi: 10.1186/1471-2164-9-102
PMCID:
PMC2292177
ArticlePDF–1.0M
17.
The HU–DNA binding interaction probed with UV resonance Raman spectroscopy: Structural elements of specificity
Kristi Wojtuszewski, Ishita Mukerji
Protein Sci. 2004 Sep; 13(9): 2416–2428. doi: 10.1110/ps.04730204
PMCID:
PMC2280020
ArticlePDF–276K
18.
HU binds and folds single-stranded DNA
Dmitri Kamashev, Anna Balandina, Alexey K. Mazur, Paola B. Arimondo, Josette Rouviere-Yaniv
Nucleic Acids Res. 2008 Feb; 36(3): 1026–1036. Published online 2007 Dec 20. doi: 10.1093/nar/gkm667
PMCID:
PMC2241890
ArticlePDF–6.0M
19.
The Escherichia coli Histone-like Protein HU Has a Role in Stationary Phase Adaptive Mutation
Ashley B. Williams, Patricia L. Foster
Genetics. 2007 Oct; 177(2): 723–735. doi: 10.1534/genetics.107.075861
PMCID:
PMC2034638
ArticlePDF–533K
20.
Effects of nucleoid proteins on DNA repression loop formation in Escherichia coli
Nicole A. Becker, Jason D. Kahn, L. James Maher, III
Nucleic Acids Res. 2007 Jun; 35(12): 3988–4000. Published online 2007 Jun 6. doi: 10.1093/nar/gkm419
PMCID:
PMC1919473
ArticlePDF–862K

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