PMC Links for GEO Profiles (Select 559624) - PMC

Select item 88095741.

A noncanonical chaperone interacts with drug efflux pumps during their assembly into bacterial outer membranes

Christopher J. Stubenrauch, Rebecca S. Bamert, Jiawei Wang, Trevor Lithgow

PLoS Biol. 2022 Jan; 20(1): e3001523. Published online 2022 Jan 21. doi: 10.1371/journal.pbio.3001523

PMCID:: PMC8809574

Select item 59224382.

Global landscape of cell envelope protein complexes in Escherichia coli

Mohan Babu, Cedoljub Bundalovic-Torma, Charles Calmettes, Sadhna Phanse, Qingzhou Zhang, Yue Jiang, Zoran Minic, Sunyoung Kim, Jitender Mehla, Alla Gagarinova, Irina Rodionova, Ashwani Kumar, Hongbo Guo, Olga Kagan, Oxana Pogoutse, Hiroyuki Aoki, Viktor Deineko, J Harry Caufield, Erik Holtzapple, Zhongge Zhang, Ake Vastermark, Yogee Pandya, Christine Chieh-lin Lai, Majida El Bakkouri, Yogesh Hooda, Megha Shah, Dan Burnside, Mohsen Hooshyar, James Vlasblom, Sessandra V Rajagopala, Ashkan Golshani, Stefan Wuchty, Jack F Greenblatt, Milton Saier, Peter Uetz, Trevor F Moraes, John Parkinson, Andrew Emili

Nat Biotechnol. Author manuscript; available in PMC 2018 Jul 1.

Published in final edited form as: Nat Biotechnol. 2018 Jan; 36(1): 103–112. Published online 2017 Nov 27. doi: 10.1038/nbt.4024

PMCID:: PMC5922438

Abstract Article PDF–2.0M

Select item 56070993.

Structural basis for substrate selection by the translocation and assembly module of the beta-barrel assembly machinery

Rebecca S. Bamert, Karl Lundquist, Hyea Hwang, Chaille T. Webb, Takoya Shiota, Christopher J. Stubenrauch, Mathew J. Belousoff, Robert J. A. Goode, Ralf B. Schittenhelm, Richard Zimmerman, Martin Jung, James C. Gumbart, Trevor Lithgow

Mol Microbiol. Author manuscript; available in PMC 2018 Oct 1.

Published in final edited form as: Mol Microbiol. 2017 Oct; 106(1): 142–156. Published online 2017 Aug 9. doi: 10.1111/mmi.13757

PMCID:: PMC5607099

Abstract Article PDF–1.0M

Select item 23238864.

Fishing new proteins in the twilight zone of genomes: The test case of outer membrane proteins in Escherichia coli K12, Escherichia coli O157:H7, and other Gram-negative bacteria

Rita Casadio, Piero Fariselli, Giacomo Finocchiaro, Pier Luigi Martelli

Protein Sci. 2003 Jun; 12(6): 1158–1168. doi: 10.1110/ps.0223603

PMCID:: PMC2323886

Abstract Article PDF–265K

Select item 22424865.

New Escherichia coli outer membrane proteins identified through prediction and experimental verification

Paola Marani, Samuel Wagner, Louise Baars, Pierre Genevaux, Jan-Willem De Gier, Ingmarie Nilsson, Rita Casadio, Gunnar Von Heijne

Protein Sci. 2006 Apr; 15(4): 884–889. doi: 10.1110/ps.051889506

PMCID:: PMC2242486

Abstract Article PDF–264K

Select item 16814816.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Abstract Article PDF–141K

Select item 16348827.

Assembly Factor Omp85 Recognizes Its Outer Membrane Protein Substrates by a Species-Specific C-Terminal Motif

Viviane Robert, Elena B Volokhina, Freya Senf, Martine P Bos, Patrick Van Gelder, Jan Tommassen

PLoS Biol. 2006 Nov; 4(11): e377. Published online 2006 Nov 7. doi: 10.1371/journal.pbio.0040377

PMCID:: PMC1634882

Abstract Article PDF–408K

Select item 14570528.

Large-scale identification of protein–protein interaction of Escherichia coli K-12

Mohammad Arifuzzaman, Maki Maeda, Aya Itoh, Kensaku Nishikata, Chiharu Takita, Rintaro Saito, Takeshi Ara, Kenji Nakahigashi, Hsuan-Cheng Huang, Aki Hirai, Kohei Tsuzuki, Seira Nakamura, Mohammad Altaf-Ul-Amin, Taku Oshima, Tomoya Baba, Natsuko Yamamoto, Tomoyo Kawamura, Tomoko Ioka-Nakamichi, Masanari Kitagawa, Masaru Tomita, Shigehiko Kanaya, Chieko Wada, Hirotada Mori

Genome Res. 2006 May; 16(5): 686–691. doi: 10.1101/gr.4527806

PMCID:: PMC1457052

Abstract Article PDF–536K

Select item 13252009.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405

PMCID:: PMC1325200

Abstract Article PDF–204K

Select item 44148910.

BOMP: a program to predict integral β-barrel outer membrane proteins encoded within genomes of Gram-negative bacteria

Frode S. Berven, Kristian Flikka, Harald B. Jensen, Ingvar Eidhammer

Nucleic Acids Res. 2004 Jul 1; 32(Web Server issue): W394–W399. doi: 10.1093/nar/gkh351

PMCID:: PMC441489

Abstract Article PDF–105K

Select item 38787311.

Proteus mirabilis Genes That Contribute to Pathogenesis of Urinary Tract Infection: Identification of 25 Signature-Tagged Mutants Attenuated at Least 100-Fold

Laurel S. Burall, Janette M. Harro, Xin Li, C.Virginia Lockatell, Stephanie D. Himpsl, J. Richard Hebel, David E. Johnson, Harry L. T. Mobley

Infect Immun. 2004 May; 72(5): 2922–2938. doi: 10.1128/IAI.72.5.2922-2938.2004

PMCID:: PMC387873

Abstract Article PDF–1.8M

Select item 30699712.

Analysis of the Escherichia coli genome VI: DNA sequence of the region from 92.8 through 100 minutes.

V Burland, G Plunkett, 3rd, H J Sofia, D L Daniels, F R Blattner

Nucleic Acids Res. 1995 Jun 25; 23(12): 2105–2119. doi: 10.1093/nar/23.12.2105

PMCID:: PMC306997

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