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Select item 87668911.

Inactivation of RNase P in Escherichia coli significantly changes post-transcriptional RNA metabolism

Bijoy K. Mohanty, Sidney R. Kushner

Mol Microbiol. Author manuscript; available in PMC 2023 Jan 1.

Published in final edited form as: Mol Microbiol. 2022 Jan; 117(1): 121–142. Published online 2021 Sep 25. doi: 10.1111/mmi.14808

PMCID:: PMC8766891

Abstract Article PDF–1.6M

Select item 63796542.

Distributive enzyme binding controlled by local RNA context results in 3′ to 5′ directional processing of dicistronic tRNA precursors by Escherichia coli ribonuclease P

Jing Zhao, Michael E Harris

Nucleic Acids Res. 2019 Feb 20; 47(3): 1451–1467. Published online 2018 Nov 28. doi: 10.1093/nar/gky1162

PMCID:: PMC6379654

Abstract Article PDF–8.4M

Select item 56488663.

The rph-1-Encoded Truncated RNase PH Protein Inhibits RNase P Maturation of Pre-tRNAs with Short Leader Sequences in the Absence of RppH

Katherine E. Bowden, Nicholas S. Wiese, Tariq Perwez, Bijoy K. Mohanty, Sidney R. Kushner

J Bacteriol. 2017 Nov 15; 199(22): e00301-17. Prepublished online 2017 Aug 14. Published online 2017 Oct 17. doi: 10.1128/JB.00301-17

PMCID:: PMC5648866

Abstract Article PDF–877K

Select item 54995784.

Protein-only RNase P function in Escherichia coli: viability, processing defects and differences between PRORP isoenzymes

Markus Gößringer, Marcus Lechner, Nadia Brillante, Christoph Weber, Walter Rossmanith, Roland K. Hartmann

Nucleic Acids Res. 2017 Jul 7; 45(12): 7441–7454. Published online 2017 May 11. doi: 10.1093/nar/gkx405

PMCID:: PMC5499578

Abstract Article PDF–2.4M

Select item 41761625.

Processing of the seven valine tRNAs in Escherichia coli involves novel features of RNase P

Ankit Agrawal, Bijoy K. Mohanty, Sidney R. Kushner

Nucleic Acids Res. 2014 Sep 29; 42(17): 11166–11179. Published online 2014 Sep 2. doi: 10.1093/nar/gku758

PMCID:: PMC4176162

Abstract Article PDF–2.2M

Select item 41238556.

The binary protein-protein interaction landscape of Escherichia coli

Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz

Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.

Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831

PMCID:: PMC4123855

Abstract Article PDF–1.1M

Select item 38000437.

Hidden specificity in an apparently non-specific RNA-binding protein

Ulf-Peter Guenther, Lindsay E. Yandek, Courtney N. Niland, Frank E. Campbell, David Anderson, Vernon E. Anderson, Michael E. Harris, Eckhard Jankowsky

Nature. Author manuscript; available in PMC 2014 Apr 17.

Published in final edited form as: Nature. 2013 Oct 17; 502(7471): 385–388. Published online 2013 Sep 22. doi: 10.1038/nature12543

PMCID:: PMC3800043

Abstract Article PDF–676K

Select item 34107248.

Binding of C5 Protein to P RNA Enhances the Rate Constant for Catalysis for P RNA Processing of Pre-tRNAs Lacking a Consensus G(+1)/C(+72) Pair

Lei Sun, Frank E. Campbell, Lindsay E. Yandek, Michael E. Harris

J Mol Biol. Author manuscript; available in PMC 2012 Aug 2.

Published in final edited form as: J Mol Biol. 2010 Feb 5; 395(5): 1019–1037. Published online 2009 Nov 13. doi: 10.1016/j.jmb.2009.11.027

PMCID:: PMC3410724

Abstract Article PDF–1016K

Select item 28292469.

Protein-Precursor tRNA Contact Leads to Sequence-Specific Recognition of 5’ Leaders by Bacterial Ribonuclease P

Kristin S. Koutmou, Nathan H. Zahler, Jeffrey C. Kurz, Frank E. Campbell, Michael E. Harris, Carol A. Fierke

J Mol Biol. Author manuscript; available in PMC 2011 Feb 12.

Published in final edited form as: J Mol Biol. 2010 Feb 12; 396(1): 195–208. Published online 2009 Nov 28. doi: 10.1016/j.jmb.2009.11.039

PMCID:: PMC2829246

Abstract Article PDF–1.9M

Select item 281103210.

Processing of the Escherichia coli leuX tRNA transcript, encoding tRNA^Leu5, requires either the 3′→5′ exoribonuclease polynucleotide phosphorylase or RNase P to remove the Rho-independent transcription terminator

Bijoy K. Mohanty, Sidney R. Kushner

Nucleic Acids Res. 2010 Jan; 38(2): 597–607. Published online 2009 Nov 11. doi: 10.1093/nar/gkp997

PMCID:: PMC2811032

Abstract Article PDF–1.7M

Select item 279416311.

Investigation of catalysis by bacterial RNase P via LNA and other modifications at the scissile phosphodiester

Simona Cuzic-Feltens, Michael H. W. Weber, Roland K. Hartmann

Nucleic Acids Res. 2009 Dec; 37(22): 7638–7653. Published online 2009 Sep 30. doi: 10.1093/nar/gkp775

PMCID:: PMC2794163

Abstract Article PDF–1.9M

Select item 279409412.

In Vivo Display of a Multisubunit Enzyme Complex on Biogenic Magnetic Nanoparticles

Shoji Ohuchi, Dirk Schüler

Appl Environ Microbiol. 2009 Dec; 75(24): 7734–7738. Published online 2009 Oct 16. doi: 10.1128/AEM.01640-09

PMCID:: PMC2794094

Abstract Article PDF–879K

Select item 224185313.

Rho-independent transcription terminators inhibit RNase P processing of the secG leuU and metT tRNA polycistronic transcripts in Escherichia coli

Bijoy K. Mohanty, Sidney R. Kushner

Nucleic Acids Res. 2008 Feb; 36(2): 364–375. Published online 2007 Nov 22. doi: 10.1093/nar/gkm991

PMCID:: PMC2241853

Abstract Article PDF–399K

Select item 219069914.

Ribonuclease P processes polycistronic tRNA transcripts in Escherichia coli independent of ribonuclease E

Bijoy K. Mohanty, Sidney R. Kushner

Nucleic Acids Res. 2007 Dec; 35(22): 7614–7625. Published online 2007 Nov 2. doi: 10.1093/nar/gkm917

PMCID:: PMC2190699

Abstract Article PDF–383K

Select item 195076915.

Evidence that binding of C5 protein to P RNA enhances ribozyme catalysis by influencing active site metal ion affinity

Lei Sun, Michael E. Harris

RNA. 2007 Sep; 13(9): 1505–1515. doi: 10.1261/rna.571007

PMCID:: PMC1950769

Abstract Article PDF–592K

Select item 168148216.

Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection

Tomoya Baba, Takeshi Ara, Miki Hasegawa, Yuki Takai, Yoshiko Okumura, Miki Baba, Kirill A Datsenko, Masaru Tomita, Barry L Wanner, Hirotada Mori

Mol Syst Biol. 2006; 2: 2006.0008. Published online 2006 Feb 21. doi: 10.1038/msb4100050

PMCID:: PMC1681482

Abstract Article PDF–400K

Select item 168148117.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049