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Select item 110770751.

Bridging DNA contacts allow Dps from E. coli to condense DNA

Sneha Shahu, Natalia Vtyurina, Moumita Das, Anne S Meyer, Mahipal Ganji, Elio A Abbondanzieri

Nucleic Acids Res. 2024 May 8; 52(8): 4456–4465. Published online 2024 Apr 4. doi: 10.1093/nar/gkae223

PMCID:: PMC11077075

Abstract Article PDF–1.5M

Select item 81999882.

Structural Rearrangement of Dps-DNA Complex Caused by Divalent Mg and Fe Cations

Liubov Dadinova, Roman Kamyshinsky, Yury Chesnokov, Andrey Mozhaev, Vladimir Matveev, Andrey Gruzinov, Alexander Vasiliev, Eleonora Shtykova

Int J Mol Sci. 2021 Jun; 22(11): 6056. Published online 2021 Jun 3. doi: 10.3390/ijms22116056

PMCID:: PMC8199988

Abstract Article PDF–3.2M

Select item 76051093.

Multi-crystal data collection using synchrotron radiation as exemplified with low-symmetry crystals of Dps

Vladislav Kovalenko, Alexander Popov, Gianluca Santoni, Natalia Loiko, Ksenia Tereshkina, Eduard Tereshkin, Yurii Krupyanskii

Acta Crystallogr F Struct Biol Commun. 2020 Nov 1; 76(Pt 11): 568–576. Published online 2020 Oct 8. doi: 10.1107/S2053230X20012571

PMCID:: PMC7605109

Abstract Article PDF–1.6M

Select item 71162504.

Electron cryomicroscopy with sub-Ångström specimen movement

Katerina Naydenova, Peipei Jia, Christopher J. Russo

Science. Author manuscript; available in PMC 2021 Apr 9.

Published in final edited form as: Science. 2020 Oct 9; 370(6513): 223–226. doi: 10.1126/science.abb7927

PMCID:: PMC7116250

Abstract Article PDF–1.0M

Select item 54545335.

Optimized fragmentation schemes and data analysis strategies for proteome-wide cross-link identification

Fan Liu, Philip Lössl, Richard Scheltema, Rosa Viner, Albert J. R. Heck

Nat Commun. 2017; 8: 15473. Published online 2017 May 19. doi: 10.1038/ncomms15473

PMCID:: PMC5454533

Abstract Article PDF–1.5M

Select item 33463776.

Impact of Nutritional Factors on the Proteome of Intestinal Escherichia coli: Induction of OxyR-Dependent Proteins AhpF and Dps by a Lactose-Rich Diet

Monique Rothe, Carl Alpert, Wolfram Engst, Stephanie Musiol, Gunnar Loh, Michael Blaut

Appl Environ Microbiol. 2012 May; 78(10): 3580–3591. doi: 10.1128/AEM.00244-12

PMCID:: PMC3346377

Abstract Article PDF–1.6M

Select item 32679547.

Rational disruption of the oligomerization of the mini-ferritin E. coli DPS through protein-protein interface mutation

Yu Zhang, Jing Fu, Sze Y Chee, Emmiline X W Ang, Brendan P Orner

Protein Sci. 2011 Nov; 20(11): 1907–1917. Published online 2011 Sep 6. doi: 10.1002/pro.731

PMCID:: PMC3267954

Abstract Article PDF–3.7M

Select item 30676318.

The Escherichia coli K-12 MntR Miniregulon Includes dps, Which Encodes the Major Stationary-Phase DNA-Binding Protein

Kaneyoshi Yamamoto, Akira Ishihama, Stephen J. W. Busby, David C. Grainger

J Bacteriol. 2011 Mar; 193(6): 1477–1480. Published online 2011 Jan 14. doi: 10.1128/JB.01230-10

PMCID:: PMC3067631

Abstract Article PDF–1.1M

Select item 28579989.

Energetics-Based Protein Profiling on a Proteomic Scale: Identification of Proteins Resistant to Proteolysis

Chiwook Park, Sharleen Zhou, Jacqueline Gilmore, Susan Marqusee

J Mol Biol. Author manuscript; available in PMC 2010 Apr 21.

Published in final edited form as: J Mol Biol. 2007 May 18; 368(5): 1426–1437. Published online 2007 Mar 7. doi: 10.1016/j.jmb.2007.02.091

PMCID:: PMC2857998

Abstract Article PDF–2.6M

Select item 284881410.

Interplay of cellular cAMP levels, σ^S activity and oxidative stress resistance in Escherichia coli

Evelyn Barth, Katherine V. Gora, Katharina M. Gebendorfer, Florian Settele, Ursula Jakob, Jeannette Winter

Microbiology (Reading) 2009 May; 155(Pt 5): 1680–1689. doi: 10.1099/mic.0.026021-0

PMCID:: PMC2848814

Abstract Article PDF–292K

Select item 278356811.

Proteolysis in the SOS response and metal homeostasis in Escherichia coli

Mihaela Pruteanu, Tania A. Baker

Res Microbiol. Author manuscript; available in PMC 2010 Nov 1.

Published in final edited form as: Res Microbiol. 2009 Nov; 160(9): 677–683. Published online 2009 Sep 10. doi: 10.1016/j.resmic.2009.08.012

PMCID:: PMC2783568

Abstract Article PDF–341K

Select item 269936012.

Modification of PATase by L/F-transferase generates a ClpS-dependent N-end rule substrate in Escherichia coli

Robert L Ninnis, Sukhdeep K Spall, Gert H Talbo, Kaye N Truscott, David A Dougan

EMBO J. 2009 Jun 17; 28(12): 1732–1744. Published online 2009 May 14. doi: 10.1038/emboj.2009.134

PMCID:: PMC2699360

Abstract Article PDF–1.8M

Select item 268087913.

Structural basis of N-end rule substrate recognition in Escherichia coli by the ClpAP adaptor protein ClpS

Verena J Schuenemann, Stephanie M Kralik, Reinhard Albrecht, Sukhdeep K Spall, Kaye N Truscott, David A Dougan, Kornelius Zeth

EMBO Rep. 2009 May; 10(5): 508–514. Published online 2009 Apr 17. doi: 10.1038/embor.2009.62

Correction in:: EMBO Rep. 2009 Jun; 10(6): 662.

PMCID:: PMC2680879

Abstract Article PDF–1.1M

Select item 265528214.

Facile promoter deletion in Escherichia coli in response to leaky expression of very robust and benign proteins from common expression vectors

Martin Kawe, Uwe Horn, Andreas Plückthun

Microb Cell Fact. 2009; 8: 8. Published online 2009 Jan 26. doi: 10.1186/1475-2859-8-8

PMCID:: PMC2655282

Abstract Article PDF–1003K

Select item 258859615.

Acid stress damage of DNA is prevented by Dps binding in Escherichia coli O157:H7

Kwang Cheol Jeong, Kai Foong Hung, David J Baumler, Jeffrey J Byrd, Charles W Kaspar

BMC Microbiol. 2008; 8: 181. Published online 2008 Oct 15. doi: 10.1186/1471-2180-8-181

PMCID:: PMC2588596

Abstract Article PDF–717K

Select item 214428916.

Functional insights from structural predictions: analysis of the Escherichia coli genome.

L. Rychlewski, B. Zhang, A. Godzik

Protein Sci. 1999 Mar; 8(3): 614–624. doi: 10.1110/ps.8.3.614

PMCID:: PMC2144289

Summary PDF–613K

Select item 179730917.

Genome-Wide Screening of Genes Required for Swarming Motility in Escherichia coli K-12

Tetsuyoshi Inoue, Ryuji Shingaki, Shotaro Hirose, Kaori Waki, Hirotada Mori, Kazuhiro Fukui

J Bacteriol. 2007 Feb; 189(3): 950–957. Published online 2006 Nov 22. doi: 10.1128/JB.01294-06

PMCID:: PMC1797309

Abstract Article PDF–141K

Select item 168148118.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Abstract Article PDF–141K

Select item 167976719.

Dynamic state of DNA topology is essential for genome condensation in bacteria

Ryosuke L Ohniwa, Kazuya Morikawa, Joongbaek Kim, Toshiko Ohta, Akira Ishihama, Chieko Wada, Kunio Takeyasu

EMBO J. 2006 Nov 29; 25(23): 5591–5602. Published online 2006 Nov 9. doi: 10.1038/sj.emboj.7601414

PMCID:: PMC1679767

Abstract Article PDF–603K

Select item 163621920.

Time-Dependent Proteome Alterations under Osmotic Stress during Aerobic and Anaerobic Growth in Escherichia coli

Arnim Weber, Stephanie A. Kögl, Kirsten Jung

J Bacteriol. 2006 Oct; 188(20): 7165–7175. doi: 10.1128/JB.00508-06

PMCID:: PMC1636219

Abstract Article PDF–424K

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