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Select item 71033051.

The intracellular sites of early replication and budding of SARS-coronavirus

Silke Stertz, Mike Reichelt, Martin Spiegel, Thomas Kuri, Luis Martínez-Sobrido, Adolfo García-Sastre, Friedemann Weber, Georg Kochs

Virology. 2007 May 10; 361(2): 304–315. Published online 2007 Jan 8. doi: 10.1016/j.virol.2006.11.027

PMCID:: PMC7103305

Abstract Article PDF–2.6M

Select item 48698652.

A Single Subunit Directs the Assembly of the Escherichia coli DNA Sliding Clamp Loader

Ah Young Park, Slobodan Jergic, Argyris Politis, Brandon T. Ruotolo, Daniel Hirshberg, Linda L. Jessop, Jennifer L. Beck, Daniel Barsky, Mike O’Donnell, Nicholas E. Dixon, Carol V. Robinson

Structure. Author manuscript; available in PMC 2016 May 17.

Published in final edited form as: Structure. 2010 Mar 10; 18(3): 285–292. doi: 10.1016/j.str.2010.01.009

PMCID:: PMC4869865

Abstract Article PDF–782K

Select item 47116473.

Solution study of the Escherichia coli DNA polymerase III clamp loader reveals the location of the dynamic ψχ heterodimer

Farzaneh Tondnevis, Richard E. Gillilan, Linda B. Bloom, Robert McKenna

Struct Dyn. 2015 Sep; 2(5): 054701. Published online 2015 Aug 18. doi: 10.1063/1.4927407

PMCID:: PMC4711647

Abstract Article PDF–981K

Select item 41238554.

The binary protein-protein interaction landscape of Escherichia coli

Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz

Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.

Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831

PMCID:: PMC4123855

Abstract Article PDF–1.1M

Select item 37409085.

Cost of rNTP/dNTP pool imbalance at the replication fork

Nina Y. Yao, Jeremy W. Schroeder, Olga Yurieva, Lyle A. Simmons, Mike E. O’Donnell

Proc Natl Acad Sci U S A. 2013 Aug 6; 110(32): 12942–12947. Published online 2013 Jul 23. doi: 10.1073/pnas.1309506110

PMCID:: PMC3740908

Abstract Article PDF–753K

Select item 28492816.

Dual Functions, Clamp Opening and Primer-Template Recognition, Define a Key Clamp Loader Subunit

Maria Magdalena Coman, Mi Jin, Razvan Ceapa, Jeff Finkelstein, Michael O'Donnell, Brian T. Chait, Manju M. Hingorani

J Mol Biol. Author manuscript; available in PMC 2010 Apr 5.

Published in final edited form as: J Mol Biol. 2004 Oct 1; 342(5): 1457–1469. doi: 10.1016/j.jmb.2004.07.097

PMCID:: PMC2849281

Abstract Article PDF–935K

Select item 27972857.

A Slow ATP-induced Conformational Change Limits the Rate of DNA Binding but Not the Rate of β Clamp Binding by the Escherichia coli γ Complex Clamp Loader

Jennifer A. Thompson, Christopher O. Paschall, Mike O'Donnell, Linda B. Bloom

J Biol Chem. 2009 Nov 13; 284(46): 32147–32157. Published online 2009 Sep 15. doi: 10.1074/jbc.M109.045997

PMCID:: PMC2797285

Abstract Article PDF–2.2M

Select item 27815438.

The Clamp Loader Assembles the β Clamp onto Either a 3′ or 5′ Primer Terminus: THE UNDERLYING BASIS FAVORING 3′ LOADING

Mee Sook Park, Mike O'Donnell

J Biol Chem. 2009 Nov 6; 284(45): 31473–31483. Published online 2009 Sep 15. doi: 10.1074/jbc.M109.050310

PMCID:: PMC2781543

Abstract Article PDF–2.7M

Select item 27593129.

Temporal Correlation of DNA Binding, ATP Hydrolysis, and Clamp Release in the Clamp Loading Reaction Catalyzed by the Escherichia coli γ complex

Stephen G. Anderson, Jennifer A. Thompson, Christopher O. Paschall, Mike O’Donnell, Linda B. Bloom

Biochemistry. Author manuscript; available in PMC 2010 Sep 15.

Published in final edited form as: Biochemistry. 2009 Sep 15; 48(36): 8516–8527. doi: 10.1021/bi900912a

PMCID:: PMC2759312

Abstract Article PDF–2.8M

Select item 275231010.

Transposition into replicating DNA occurs through interaction with the processivity factor

Adam R. Parks, Zaoping Li, Qiaojuan Shi, Roisin M. Owens, Moonsoo M. Jin, Joseph E. Peters

Cell. Author manuscript; available in PMC 2010 Aug 21.

Published in final edited form as: Cell. 2009 Aug 21; 138(4): 685–695. doi: 10.1016/j.cell.2009.06.011

PMCID:: PMC2752310

Abstract Article PDF–1.3M

Select item 268498811.

The mechanism of ATP-dependent primer-template recognition by a clamp loader complex

Kyle R. Simonetta, Steven L. Kazmirski, Eric R. Goedken, Aaron J. Cantor, Brian A. Kelch, Randall McNally, Steven N. Seyedin, Debora L. Makino, Mike O’Donnell, John Kuriyan

Cell. Author manuscript; available in PMC 2009 Nov 15.

Published in final edited form as: Cell. 2009 May 15; 137(4): 659–671. doi: 10.1016/j.cell.2009.03.044

PMCID:: PMC2684988

Abstract Article PDF–6.8M

Select item 242547612.

Conserved residues in the δ subunit help the E. coli clamp loader, γ complex, target primer-template DNA for clamp assembly

Siying Chen, Maria Magdalena Coman, Miho Sakato, Michael O’Donnell, Manju M. Hingorani

Nucleic Acids Res. 2008 Jun; 36(10): 3274–3286. Published online 2008 Apr 19. doi: 10.1093/nar/gkn157

PMCID:: PMC2425476

Abstract Article PDF–655K

Select item 168148213.

Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection

Tomoya Baba, Takeshi Ara, Miki Hasegawa, Yuki Takai, Yoshiko Okumura, Miki Baba, Kirill A Datsenko, Masaru Tomita, Barry L Wanner, Hirotada Mori

Mol Syst Biol. 2006; 2: 2006.0008. Published online 2006 Feb 21. doi: 10.1038/msb4100050

PMCID:: PMC1681482

Abstract Article PDF–400K

Select item 168148114.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Abstract Article PDF–141K

Select item 145705215.

Large-scale identification of protein–protein interaction of Escherichia coli K-12

Mohammad Arifuzzaman, Maki Maeda, Aya Itoh, Kensaku Nishikata, Chiharu Takita, Rintaro Saito, Takeshi Ara, Kenji Nakahigashi, Hsuan-Cheng Huang, Aki Hirai, Kohei Tsuzuki, Seira Nakamura, Mohammad Altaf-Ul-Amin, Taku Oshima, Tomoya Baba, Natsuko Yamamoto, Tomoyo Kawamura, Tomoko Ioka-Nakamichi, Masanari Kitagawa, Masaru Tomita, Shigehiko Kanaya, Chieko Wada, Hirotada Mori

Genome Res. 2006 May; 16(5): 686–691. doi: 10.1101/gr.4527806

PMCID:: PMC1457052

Abstract Article PDF–536K

Select item 132520016.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405