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Select item 86712271.

Allosteric regulation within the highly interconnected structural scaffold of AraC/XylS homologs tolerates a wide range of amino acid changes

Hunter R. Picard, Kristen S. Schwingen, Lisa M. Green, David L. Shis, Susan M. Egan, Matthew R. Bennett, Liskin Swint-Kruse

Proteins. Author manuscript; available in PMC 2023 Jan 1.

Published in final edited form as: Proteins. 2022 Jan; 90(1): 186–199. Published online 2021 Aug 16. doi: 10.1002/prot.26206

PMCID:: PMC8671227

Abstract Article PDF–2.7M

Select item 41238552.

The binary protein-protein interaction landscape of Escherichia coli

Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz

Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.

Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831

PMCID:: PMC4123855

Abstract Article PDF–1.1M

Select item 39111523.

Genome-Scale Analyses of Escherichia coli and Salmonella enterica AraC Reveal Noncanonical Targets and an Expanded Core Regulon

Anne M. Stringer, Salvatore Currenti, Richard P. Bonocora, Catherine Baranowski, Brianna L. Petrone, Michael J. Palumbo, Andrew A. Reilly, Zhen Zhang, Ivan Erill, Joseph T. Wade

J Bacteriol. 2014 Feb; 196(3): 660–671. doi: 10.1128/JB.01007-13

PMCID:: PMC3911152

Abstract Article PDF–1008K

Select item 31872134.

Active Role of the Interdomain Linker of AraC

Jennifer Seedorff, Robert Schleif

J Bacteriol. 2011 Oct; 193(20): 5737–5746. doi: 10.1128/JB.05339-11

PMCID:: PMC3187213

Abstract Article PDF–792K

Select item 27900155.

A DNA-Assisted Binding Assay for Weak Protein-Protein Interactions

Katherine E. Frato, Robert F. Schleif

J Mol Biol. Author manuscript; available in PMC 2010 Dec 18.

Published in final edited form as: J Mol Biol. 2009 Dec 18; 394(5): 805–814. Published online 2009 Oct 6. doi: 10.1016/j.jmb.2009.09.064

PMCID:: PMC2790015

Abstract Article PDF–913K

Select item 27456376.

Solution Structure of the DNA Binding Domain of AraC Protein

Michael E. Rodgers, Robert Schleif

Proteins. Author manuscript; available in PMC 2010 Oct 1.

Published in final edited form as: Proteins. 2009 Oct; 77(1): 202–208. doi: 10.1002/prot.22431

PMCID:: PMC2745637

Abstract Article PDF–1.0M

Select item 26683897.

Constitutive Mutations in the Escherichia coli AraC Protein

Stephanie Dirla, John Yeh-Heng Chien, Robert Schleif

J Bacteriol. 2009 Apr; 191(8): 2668–2674. Published online 2009 Feb 13. doi: 10.1128/JB.01529-08

PMCID:: PMC2668389

Abstract Article PDF–535K

Select item 26052048.

Functional Modes of The Regulatory Arm of AraC

Michael E. Rodgers, Nakisha D. Holder, Stephanie Dirla, Robert Schleif

Proteins. Author manuscript; available in PMC 2010 Jan 1.

Published in final edited form as: Proteins. 2009 Jan; 74(1): 81–91. doi: 10.1002/prot.22137

PMCID:: PMC2605204

Abstract Article PDF–1.5M

Select item 24837549.

Timing and Dynamics of Single Cell Gene Expression in the Arabinose Utilization System

Judith A. Megerle, Georg Fritz, Ulrich Gerland, Kirsten Jung, Joachim O. Rädler

Biophys J. 2008 Aug 15; 95(4): 2103–2115. Published online 2008 May 9. doi: 10.1529/biophysj.107.127191

PMCID:: PMC2483754

Abstract Article PDF–872K

Select item 229217710.

Protein abundance profiling of the Escherichia coli cytosol

Yasushi Ishihama, Thorsten Schmidt, Juri Rappsilber, Matthias Mann, F Ulrich Hartl, Michael J Kerner, Dmitrij Frishman

BMC Genomics. 2008; 9: 102. Published online 2008 Feb 27. doi: 10.1186/1471-2164-9-102

PMCID:: PMC2292177

Abstract Article PDF–1.0M

Select item 224243711.

Specific interactions by the N-terminal arm inhibit self-association of the AraC dimerization domain

John E. Weldon, Robert F. Schleif

Protein Sci. 2006 Dec; 15(12): 2828–2835. doi: 10.1110/ps.062327506

PMCID:: PMC2242437

Abstract Article PDF–267K

Select item 207493112.

Directed Evolution of AraC for Improved Compatibility of Arabinose- and Lactose-Inducible Promoters

Sung Kuk Lee, Howard H. Chou, Brian F. Pfleger, Jack D. Newman, Yasuo Yoshikuni, Jay D. Keasling

Appl Environ Microbiol. 2007 Sep; 73(18): 5711–5715. Published online 2007 Jul 20. doi: 10.1128/AEM.00791-07

PMCID:: PMC2074931

Abstract Article PDF–212K

Select item 168148113.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Abstract Article PDF–141K

Select item 132520014.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405