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Items: 1 to 20 of 25

1.
The binary protein-protein interaction landscape of Escherichia coli
Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz
Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.
Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831
PMCID:
PMC4123855
AbstractArticlePDF–1.1M
2.
Mismatch repair proteins collaborate with methyltransferases in the repair of O6-methylguanine
Peter T. Rye, James C. Delaney, Chawita Netirojjanakul, Dana X. Sun, Jenny Z. Liu, John M. Essigmann
DNA Repair (Amst) Author manuscript; available in PMC 2011 Jan 5.
Published in final edited form as: DNA Repair (Amst). 2008 Feb 1; 7(2): 170–176. Published online 2007 Oct 24. doi: 10.1016/j.dnarep.2007.09.003
PMCID:
PMC3015234
AbstractArticlePDF–508K
3.
Physical and functional interactions between Escherichia coli MutL and the Vsr repair endonuclease
Roger J. Heinze, Luis Giron-Monzon, Alexandra Solovyova, Sarah L. Elliot, Sven Geisler, Claire G. Cupples, Bernard A. Connolly, Peter Friedhoff
Nucleic Acids Res. 2009 Jul; 37(13): 4453–4463. Published online 2009 May 27. doi: 10.1093/nar/gkp380
PMCID:
PMC2715241
AbstractArticlePDF–6.8M
4.
The Escherichia coli Mismatch Repair Protein MutL Recruits the Vsr and MutH Endonucleases in Response to DNA Damage
Yaroslava Y. Polosina, Justin Mui, Photini Pitsikas, Claire G. Cupples
J Bacteriol. 2009 Jun; 191(12): 4041–4043. Published online 2009 Apr 17. doi: 10.1128/JB.00066-09
PMCID:
PMC2698396
AbstractArticlePDF–241K
5.
Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110
Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi
Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049
PMCID:
PMC1681481
AbstractArticlePDF–141K
6.
Escherichia coli K-12: a cooperatively developed annotation snapshot—2005
Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner
Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405
PMCID:
PMC1325200
AbstractArticlePDF–204K
7.
Spontaneous Mutation at a 5-Methylcytosine Hotspot Is Prevented by Very Short Patch (Vsp) Mismatch Repair
M. Lieb
Genetics. 1991 May; 128(1): 23–27. doi: 10.1093/genetics/128.1.23
PMCID:
PMC1204449
SummaryPDF–474K
8.
CA repeat polymorphism at the D5S82 locus, proximal to adenomatous polyposis coli (APC)
C. Breukel, C. Tops, C. Van Leeuwen, H. Van Der Klift, Y. Nakamura, R. Fodde, P.M. Khan
Nucleic Acids Res. 1991 Oct 25; 19(20): 5804. doi: 10.1093/nar/19.20.5804
PMCID:
PMC329019
SummaryPage BrowsePDF–131K
9.
Nucleotide sequence of the dcm locus of Escherichia coli K12.
T Hanck, N Gerwin, H J Fritz
Nucleic Acids Res. 1989 Jul 25; 17(14): 5844. doi: 10.1093/nar/17.14.5844
PMCID:
PMC318207
SummaryPage BrowsePDF–150K
10.
DNA mismatch correction by Very Short Patch repair may have altered the abundance of oligonucleotides in the E. coli genome.
A S Bhagwat, M McClelland
Nucleic Acids Res. 1992 Apr 11; 20(7): 1663–1668. doi: 10.1093/nar/20.7.1663
PMCID:
PMC312253
SummaryPage BrowsePDF–1.0M
11.
Statistical evaluation and biological interpretation of non-random abundance in the E. coli K-12 genome of tetra- and pentanucleotide sequences related to VSP DNA mismatch repair.
R Merkl, M Kröger, P Rice, H J Fritz
Nucleic Acids Res. 1992 Apr 11; 20(7): 1657–1662. doi: 10.1093/nar/20.7.1657
PMCID:
PMC312252
SummaryPage BrowsePDF–1.0M
12.
A gene required for very short patch repair in Escherichia coli is adjacent to the DNA cytosine methylase gene.
A Sohail, M Lieb, M Dar, A S Bhagwat
J Bacteriol. 1990 Aug; 172(8): 4214–4221. doi: 10.1128/jb.172.8.4214-4221.1990
PMCID:
PMC213244
SummaryPage BrowsePDF–1.5M
13.
Isolation and characterization of an Escherichia coli strain with a high frequency of C-to-T mutations at 5-methylcytosines.
S M Ruiz, S Létourneau, C G Cupples
J Bacteriol. 1993 Aug; 175(16): 4985–4989. doi: 10.1128/jb.175.16.4985-4989.1993
PMCID:
PMC204963
SummaryPage BrowsePDF–861K
14.
The Vsr endonuclease of Escherichia coli: an efficient DNA repair enzyme and a potent mutagen.
G Macintyre, K M Doiron, C G Cupples
J Bacteriol. 1997 Oct; 179(19): 6048–6052. doi: 10.1128/jb.179.19.6048-6052.1997
PMCID:
PMC179507
SummaryPDF–306K
15.
Overexpression of vsr in Escherichia coli is mutagenic.
K M Doiron, S Viau, M Koutroumanis, C G Cupples
J Bacteriol. 1996 Jul; 178(14): 4294–4296. doi: 10.1128/jb.178.14.4294-4296.1996
PMCID:
PMC178189
SummaryPDF–220K
16.
Very short patch repair of T:G mismatches in vivo: importance of context and accessory proteins.
M Lieb, S Rehmat
J Bacteriol. 1995 Feb; 177(3): 660–666. doi: 10.1128/jb.177.3.660-666.1995
PMCID:
PMC176641
SummaryPDF–257K
17.
Crystal structure of the Escherichia coli dcm very-short-patch DNA repair endonuclease bound to its reaction product-site in a DNA superhelix
Karen A. Bunting, S. Mark Roe, Anthony Headley, Tom Brown, Renos Savva, Laurence H. Pearl
Nucleic Acids Res. 2003 Mar 15; 31(6): 1633–1639. doi: 10.1093/nar/gkg273
Correction in:
Nucleic Acids Res. 2003 Jun 15; 31(12): 3287.
PMCID:
PMC152875
AbstractArticlePDF–300K
18.
A DNA Methyltransferase Can Protect the Genome from Postdisturbance Attack by a Restriction-Modification Gene Complex
Noriko Takahashi, Yasuhiro Naito, Naofumi Handa, Ichizo Kobayashi
J Bacteriol. 2002 Nov; 184(22): 6100–6108. doi: 10.1128/JB.184.22.6100-6108.2002
PMCID:
PMC151934
AbstractArticlePDF–1.3M
19.
The Escherichia coli MutL protein stimulates binding of Vsr and MutS to heteroduplex DNA.
K Drotschmann, A Aronshtam, H J Fritz, M G Marinus
Nucleic Acids Res. 1998 Feb 15; 26(4): 948–953. doi: 10.1093/nar/26.4.948
PMCID:
PMC147374
SummaryPDF–183K
20.
Holliday junction resolvases and related nucleases: identification of new families, phyletic distribution and evolutionary trajectories
L. Aravind, Kira S. Makarova, Eugene V. Koonin
Nucleic Acids Res. 2000 Sep 15; 28(18): 3417–3432. doi: 10.1093/nar/28.18.3417
PMCID:
PMC110722
AbstractArticlePDF–3.3M

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