PMC Links for GEO Profiles (Select 56558000) - PMC

Select item 81650301.

Dual Proteome-scale Networks Reveal Cell-specific Remodeling of the Human Interactome

Edward L. Huttlin, Raphael J. Bruckner, Jose Navarrete-Perea, Joe R. Cannon, Kurt Baltier, Fana Gebreab, Melanie P. Gygi, Alexandra Thornock, Gabriela Zarraga, Stanley Tam, John Szpyt, Brandon M. Gassaway, Alexandra Panov, Hannah Parzen, Sipei Fu, Arvene Golbazi, Eila Maenpaa, Keegan Stricker, Sanjukta Guha Thakurta, Tian Zhang, Ramin Rad, Joshua Pan, David P. Nusinow, Joao A. Paulo, Devin K. Schweppe, Laura Pontano Vaites, J. Wade Harper, Steven P. Gygi

Cell. Author manuscript; available in PMC 2022 May 27.

Published in final edited form as: Cell. 2021 May 27; 184(11): 3022–3040.e28. Published online 2021 May 6. doi: 10.1016/j.cell.2021.04.011

PMCID:: PMC8165030

Abstract Article PDF–2.2M

Select item 75857372.

Alterations of type II classical cadherin, cadherin-10 (CDH10), is associated with pancreatic ductal adenocarcinomas

Natini Jinawath, Meng-Shin Shiao, Alexis Norris, Kathleen Murphy, Alison P. Klein, Raluca Yonescu, Christine Iacobuzio-Donahue, Alan Meeker, Artit Jinawath, Charles J. Yeo, James R. Eshleman, Ralph H. Hruban, Jonathan R. Brody, Constance A. Griffin, Shuko Harada

Genes Chromosomes Cancer. Author manuscript; available in PMC 2020 Oct 25.

Published in final edited form as: Genes Chromosomes Cancer. 2017 May; 56(5): 427–435. Published online 2017 Mar 7. doi: 10.1002/gcc.22447

PMCID:: PMC7585737

Abstract Article PDF–1.2M

Select item 71504963.

G9a-mediated repression of CDH10 in hypoxia enhances breast tumour cell motility and associates with poor survival outcome

Francesco Casciello, Fares Al-Ejeh, Mariska Miranda, Greg Kelly, Eva Baxter, Karolina Windloch, Frank Gannon, Jason S Lee

Theranostics. 2020; 10(10): 4515–4529. Published online 2020 Mar 15. doi: 10.7150/thno.41453

PMCID:: PMC7150496

Abstract Article PDF–3.0M

Select item 55316114.

Architecture of the human interactome defines protein communities and disease networks

Edward L. Huttlin, Raphael J. Bruckner, Joao A. Paulo, Joe R. Cannon, Lily Ting, Kurt Baltier, Greg Colby, Fana Gebreab, Melanie P. Gygi, Hannah Parzen, John Szpyt, Stanley Tam, Gabriela Zarraga, Laura Pontano-Vaites, Sharan Swarup, Anne E. White, Devin K. Schweppe, Ramin Rad, Brian K. Erickson, Robert A. Obar, K.G. Guruharsha, Kejie Li, Spyros Artavanis-Tsakonas, Steven P. Gygi, J. Wade Harper

Nature. Author manuscript; available in PMC 2017 Nov 17.

Published in final edited form as: Nature. 2017 May 25; 545(7655): 505–509. Published online 2017 May 17. doi: 10.1038/nature22366

PMCID:: PMC5531611

Abstract Article PDF–2.7M

Select item 46215045.

Whole Exome Sequencing Identifies Frequent Somatic Mutations in Cell-Cell Adhesion Genes in Chinese Patients with Lung Squamous Cell Carcinoma

Chenguang Li, Zhibo Gao, Fei Li, Xiangchun Li, Yihua Sun, Mengyun Wang, Dan Li, Rui Wang, Fuming Li, Rong Fang, Yunjian Pan, Xiaoyang Luo, Jing He, Liangtao Zheng, Jufeng Xia, Lixin Qiu, Jun He, Ting Ye, Ruoxin Zhang, Minghui He, Meiling Zhu, Haichuan Hu, Tingyan Shi, Xiaoyan Zhou, Menghong Sun, Shilin Tian, Yong Zhou, Qiaoxiu Wang, Longyun Chen, Guangliang Yin, Jingya Lu, Renhua Wu, Guangwu Guo, Yingrui Li, Xueda Hu, Lin Li, A Asan, Qin Wang, Ye Yin, Qiang Feng, Bin Wang, Hang Wang, Mingbang Wang, Xiaonan Yang, Xiuqing Zhang, Huanming Yang, Li Jin, Cun-Yu Wang, Hongbin Ji, Haiquan Chen, Jun Wang, Qingyi Wei

Sci Rep. 2015; 5: 14237. Published online 2015 Oct 27. doi: 10.1038/srep14237

PMCID:: PMC4621504

Abstract Article PDF–1.2M

Select item 43922126.

Novel recurrently mutated genes and a prognostic mutation signature in colorectal cancer

Jun Yu, William K K Wu, Xiangchun Li, Jun He, Xiao-Xing Li, Simon S M Ng, Chang Yu, Zhibo Gao, Jie Yang, Miao Li, Qiaoxiu Wang, Qiaoyi Liang, Yi Pan, Joanna H Tong, Ka F To, Nathalie Wong, Ning Zhang, Jie Chen, Youyong Lu, Paul B S Lai, Francis K L Chan, Yingrui Li, Hsiang-Fu Kung, Huanming Yang, Jun Wang, Joseph J Y Sung

Gut. 2015 Apr; 64(4): 636–645. Published online 2014 Jun 20. doi: 10.1136/gutjnl-2013-306620

PMCID:: PMC4392212

Abstract Article PDF–2.4M

Select item 42310237.

Genome-Wide Association Study in Obsessive-Compulsive Disorder: Results from the OCGAS

Manuel Mattheisen, Jack F. Samuels, Ying Wang, Benjamin D. Greenberg, Abby J. Fyer, James T. McCracken, Daniel A. Geller, Dennis L. Murphy, James A. Knowles, Marco A. Grados, Mark A. Riddle, Steven A. Rasmussen, Nicole C. McLaughlin, Erica Nurmi, Kathleen D. Askland, Hai-De Qin, Bernadette A. Cullen, John Piacentini, David L. Pauls, O. Joseph Bienvenu, S. Evelyn Stewart, Kung-Yee Liang, Fernando S. Goes, Brion Maher, Ann E. Pulver, Yin-Yao Shugart, David Valle, Cristoph Lange, Gerald Nestadt

Mol Psychiatry. Author manuscript; available in PMC 2015 Sep 1.

Published in final edited form as: Mol Psychiatry. 2015 Mar; 20(3): 337–344. Published online 2014 May 13. doi: 10.1038/mp.2014.43

PMCID:: PMC4231023

Abstract Article PDF–986K

Select item 39965378.

Protein interaction network of alternatively spliced isoforms from brain links genetic risk factors for autism

Roser Corominas, Xinping Yang, Guan Ning Lin, Shuli Kang, Yun Shen, Lila Ghamsari, Martin Broly, Maria Rodriguez, Stanley Tam, Shelly A. Wanamaker, Changyu Fan, Song Yi, Murat Tasan, Irma Lemmens, Xingyan Kuang, Nan Zhao, Dheeraj Malhotra, Jacob J. Michaelson, Vladimir Vacic, Michael A. Calderwood, Frederick P. Roth, Jan Tavernier, Steve Horvath, Kourosh Salehi-Ashtiani, Dmitry Korkin, Jonathan Sebat, David E. Hill, Tong Hao, Marc Vidal, Lilia M. Iakoucheva

Nat Commun. 2014; 5: 3650. Published online 2014 Apr 11. doi: 10.1038/ncomms4650

Correction in:: Nat Commun. 2023; 14: 569.

PMCID:: PMC3996537

Abstract Article PDF–1.9M

Select item 31780599.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 294351110.

Common genetic variants on 5p14.1 associate with autism spectrum disorders

Kai Wang, Haitao Zhang, Deqiong Ma, Maja Bucan, Joseph T. Glessner, Brett S. Abrahams, Daria Salyakina, Marcin Imielinski, Jonathan P. Bradfield, Patrick M. A. Sleiman, Cecilia E. Kim, Cuiping Hou, Edward Frackelton, Rosetta Chiavacci, Nagahide Takahashi, Takeshi Sakurai, Eric Rappaport, Clara M. Lajonchere, Jeffrey Munson, Annette Estes, Olena Korvatska, Joseph Piven, Lisa I. Sonnenblick, Ana I. Alvarez Retuerto, Edward I. Herman, Hongmei Dong, Ted Hutman, Marian Sigman, Sally Ozonoff, Ami Klin, Thomas Owley, John A. Sweeney, Camille W. Brune, Rita M. Cantor, Raphael Bernier, John R. Gilbert, Michael L. Cuccaro, William M. McMahon, Judith Miller, Matthew W. State, Thomas H. Wassink, Hilary Coon, Susan E. Levy, Robert T. Schultz, John I. Nurnberger, Jr, Jonathan L. Haines, James S. Sutcliffe, Edwin H. Cook, Nancy J. Minshew, Joseph D. Buxbaum, Geraldine Dawson, Struan F. A. Grant, Daniel H. Geschwind, Margaret A. Pericak-Vance, Gerard D. Schellenberg, Hakon Hakonarson

Nature. Author manuscript; available in PMC 2010 Sep 21.

Published in final edited form as: Nature. 2009 May 28; 459(7246): 528–533. Published online 2009 Apr 28. doi: 10.1038/nature07999

PMCID:: PMC2943511

Abstract Article PDF–1.0M

Select item 291841011.

A genome-wide association study of autism reveals a common novel risk locus at 5p14.1

DQ Ma, Daria Salyakina, James M. Jaworski, Ioanna Konidari, Patrice L. Whitehead, Ashley N. Andersen, Joshua D. Hoffman, Susan H. Slifer, Dale J. Hedges, Holly N. Cukier, Jacob L. McCauley, Gary W. Beecham, Harry H. Wright, Ruth K. Abramson, Eden R. Martin, John P. Hussman, John R. Gilbert, Michael L. Cuccaro, Jonathan L. Haines, Margaret A. Pericak-Vance.

Ann Hum Genet. Author manuscript; available in PMC 2010 Aug 9.

Published in final edited form as: Ann Hum Genet. 2009 May; 73(Pt 3): 263–273. doi: 10.1111/j.1469-1809.2009.00523.x

PMCID:: PMC2918410

Abstract Article PDF–812K

Select item 289646412.

Personalized Smoking Cessation: Interactions between Nicotine Dose, Dependence and Quit-Success Genotype Score

Jed E Rose, Frédérique M Behm, Tomas Drgon, Catherine Johnson, George R Uhl

Mol Med. 2010 Jul-Aug; 16(7-8): 247–253. Published online 2010 Mar 17. doi: 10.2119/molmed.2009.00159

Correction in:: Mol Med. 2012; 18(1): 729.

PMCID:: PMC2896464

Abstract Article PDF–2.4M

Select item 212029013.

E-cadherin and APC compete for the interaction with beta-catenin and the cytoskeleton

J Cell Biol. 1994 Dec 2; 127(6): 2061–2069. doi: 10.1083/jcb.127.6.2061

PMCID:: PMC2120290

Summary PDF–1.5M

Select item 135612914.

Diversification of transcriptional modulation: Large-scale identification and characterization of putative alternative promoters of human genes

Kouichi Kimura, Ai Wakamatsu, Yutaka Suzuki, Toshio Ota, Tetsuo Nishikawa, Riu Yamashita, Jun-ichi Yamamoto, Mitsuo Sekine, Katsuki Tsuritani, Hiroyuki Wakaguri, Shizuko Ishii, Tomoyasu Sugiyama, Kaoru Saito, Yuko Isono, Ryotaro Irie, Norihiro Kushida, Takahiro Yoneyama, Rie Otsuka, Katsuhiro Kanda, Takahide Yokoi, Hiroshi Kondo, Masako Wagatsuma, Katsuji Murakawa, Shinichi Ishida, Tadashi Ishibashi, Asako Takahashi-Fujii, Tomoo Tanase, Keiichi Nagai, Hisashi Kikuchi, Kenta Nakai, Takao Isogai, Sumio Sugano

Genome Res. 2006 Jan; 16(1): 55–65. doi: 10.1101/gr.4039406

PMCID:: PMC1356129

Abstract Article PDF–438K

Select item 122113315.

Identification of three human type-II classic cadherins and frequent heterophilic interactions between different subclasses of type-II classic cadherins.

Y Shimoyama, G Tsujimoto, M Kitajima, M Natori

Biochem J. 2000 Jul 1; 349(Pt 1): 159–167. doi: 10.1042/0264-6021:3490159

PMCID:: PMC1221133

Summary PDF–417K

Select item 36177516.

Diversity of the cadherin family: evidence for eight new cadherins in nervous tissue.

S Suzuki, K Sano, H Tanihara

Cell Regul. 1991 Apr; 2(4): 261–270. doi: 10.1091/mbc.2.4.261

PMCID:: PMC361775

Summary Page Browse PDF–1.8M

Select item 13924117.

Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences

Mammalian Gene Collection (MGC) Program Team

Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899

PMCID:: PMC139241

Abstract Article PDF–118K

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