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Items: 1 to 20 of 70

1.
Transcriptional pause extension benefits the stand-by rather than catch-up Rho-dependent termination
Eunho Song, Seungha Hwang, Palinda Ruvan Munasingha, Yeon-Soo Seo, Jin Young Kang, Changwon Kang, Sungchul Hohng
Nucleic Acids Res. 2023 Apr 11; 51(6): 2778–2789. Published online 2023 Feb 10. doi: 10.1093/nar/gkad051
PMCID:
PMC10085680
AbstractArticlePDF–3.8M
2.
Structural basis of Rho-dependent transcription termination
Vadim Molodtsov, Chengyuan Wang, Emre Firlar, Jason T. Kaelber, Richard H. Ebright
Nature. Author manuscript; available in PMC 2023 Aug 1.
Published in final edited form as: Nature. 2023 Feb; 614(7947): 367–374. Published online 2023 Jan 25. doi: 10.1038/s41586-022-05658-1
PMCID:
PMC9911385
AbstractArticlePDF–3.3M
3.
Pre-Termination Transcription Complex: Structure and Function
Zhitai Hao, Vitaly Epshtein, Kelly H. Kim, Sergey Proshkin, Vladimir Svetlov, Venu Kamarthapu, Binod Bharati, Alexander Mironov, Thomas Walz, Evgeny Nudler
Mol Cell. Author manuscript; available in PMC 2022 Jan 21.
Published in final edited form as: Mol Cell. 2021 Jan 21; 81(2): 281–292.e8. Published online 2020 Dec 8. doi: 10.1016/j.molcel.2020.11.013
PMCID:
PMC7904319
AbstractArticlePDF–2.4M
4.
Steps toward translocation-independent RNA polymerase inactivation by terminator ATPase ρ
Nelly Said, Tarek Hilal, Nicholas D. Sunday, Ajay Khatri, Jörg Bürger, Thorsten Mielke, Georgiy A. Belogurov, Bernhard Loll, Ranjan Sen, Irina Artsimovitch, Markus C. Wahl
Science. Author manuscript; available in PMC 2022 Jan 1.
Published in final edited form as: Science. 2021 Jan 1; 371(6524): eabd1673. Published online 2020 Nov 26. doi: 10.1126/science.abd1673
PMCID:
PMC7864586
AbstractArticlePDF–4.7M
5.
Crystal structure of the Escherichia coli transcription termination factor Rho
Chengcheng Fan, Douglas C. Rees
Acta Crystallogr F Struct Biol Commun. 2020 Sep 1; 76(Pt 9): 398–405. Published online 2020 Aug 20. doi: 10.1107/S2053230X20010572
PMCID:
PMC7470046
AbstractArticlePDF–2.0M
6.
Rho-dependent transcription termination in bacteria recycles RNA polymerases stalled at DNA lesions
Sriyans Jain, Richa Gupta, Ranjan Sen
Nat Commun. 2019; 10: 1207. Published online 2019 Mar 14. doi: 10.1038/s41467-019-09146-5
PMCID:
PMC6418286
AbstractArticlePDF–2.3M
7.
A multivariate prediction model for Rho-dependent termination of transcription
Cédric Nadiras, Eric Eveno, Annie Schwartz, Nara Figueroa-Bossi, Marc Boudvillain
Nucleic Acids Res. 2018 Sep 19; 46(16): 8245–8260. Published online 2018 Jun 21. doi: 10.1093/nar/gky563
PMCID:
PMC6144790
AbstractArticlePDF–1.4M
8.
Genome-wide relationship between R-loop formation and antisense transcription in Escherichia coli
Nalini Raghunathan, Rajvardhan M Kapshikar, Jakku K Leela, Jillella Mallikarjun, Philippe Bouloc, Jayaraman Gowrishankar
Nucleic Acids Res. 2018 Apr 20; 46(7): 3400–3411. Published online 2018 Feb 21. doi: 10.1093/nar/gky118
PMCID:
PMC5909445
AbstractArticlePDF–4.2M
9.
Translational control and Rho-dependent transcription termination are intimately linked in riboswitch regulation
Laurène Bastet, Adrien Chauvier, Navjot Singh, Antony Lussier, Anne-Marie Lamontagne, Karine Prévost, Eric Massé, Joseph T. Wade, Daniel A. Lafontaine
Nucleic Acids Res. 2017 Jul 7; 45(12): 7474–7486. Published online 2017 May 18. doi: 10.1093/nar/gkx434
PMCID:
PMC5499598
AbstractArticlePDF–4.7M
10.
A Screen for rfaH Suppressors Reveals a Key Role for a Connector Region of Termination Factor Rho
Kuang Hu, Irina Artsimovitch
mBio. 2017 May-Jun; 8(3): e00753-17. Published online 2017 May 30. doi: 10.1128/mBio.00753-17
PMCID:
PMC5449661
AbstractArticlePDF–1.5M
11.
Ligand-induced and small-molecule control of substrate loading in a hexameric helicase
Michael R. Lawson, Kevin Dyer, James M. Berger
Proc Natl Acad Sci U S A. 2016 Nov 29; 113(48): 13714–13719. Published online 2016 Nov 7. doi: 10.1073/pnas.1616749113
PMCID:
PMC5137764
AbstractArticlePDF–1.4M
12.
Molecular Basis of NusG-mediated Regulation of Rho-dependent Transcription Termination in Bacteria
Vishalini Valabhoju, Sonia Agrawal, Ranjan Sen
J Biol Chem. 2016 Oct 21; 291(43): 22386–22403. Published online 2016 Sep 7. doi: 10.1074/jbc.M116.745364
PMCID:
PMC5077180
AbstractArticlePDF–4.5M
13.
The binary protein-protein interaction landscape of Escherichia coli
Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz
Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.
Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831
PMCID:
PMC4123855
AbstractArticlePDF–1.1M
14.
Termination Factor Rho and Its Cofactors NusA and NusG Silence Foreign DNA in E. coli
Christopher J. Cardinale, Robert S. Washburn, Vasisht R. Tadigotla, Lewis M. Brown, Max E. Gottesman, Evgeny Nudler
Science. Author manuscript; available in PMC 2014 Jun 16.
Published in final edited form as: Science. 2008 May 16; 320(5878): 935–938. doi: 10.1126/science.1152763
PMCID:
PMC4059013
AbstractArticlePDF–1.3M
15.
Rho and NusG suppress pervasive antisense transcription in Escherichia coli
Jason M. Peters, Rachel A. Mooney, Jeffrey A. Grass, Erik D. Jessen, Frances Tran, Robert Landick
Genes Dev. 2012 Dec 1; 26(23): 2621–2633. doi: 10.1101/gad.196741.112
PMCID:
PMC3521622
AbstractArticlePDF–1.1M
16.
The Sm-like RNA chaperone Hfq mediates transcription antitermination at Rho-dependent terminators
Makhlouf Rabhi, Olivier Espéli, Annie Schwartz, Bastien Cayrol, A Rachid Rahmouni, Véronique Arluison, Marc Boudvillain
EMBO J. 2011 Jul 20; 30(14): 2805–2816. Published online 2011 Jun 14. doi: 10.1038/emboj.2011.192
PMCID:
PMC3160251
AbstractArticlePDF–753K
17.
Compromised Factor-Dependent Transcription Termination in a nusA Mutant of Escherichia coli: Spectrum of Termination Efficiencies Generated by Perturbations of Rho, NusG, NusA, and H-NS Family Proteins
Shivalika Saxena, J. Gowrishankar
J Bacteriol. 2011 Aug; 193(15): 3842–3850. doi: 10.1128/JB.00221-11
PMCID:
PMC3147515
AbstractArticlePDF–839K
18.
Modulation of Rho-Dependent Transcription Termination in Escherichia coli by the H-NS Family of Proteins
Shivalika Saxena, J. Gowrishankar
J Bacteriol. 2011 Aug; 193(15): 3832–3841. doi: 10.1128/JB.00220-11
PMCID:
PMC3147512
AbstractArticlePDF–1.1M
19.
ADP but Not Pi Dissociation Contributes to Rate Limitation for Escherichia coli Rho
Xin Chen, Barbara L. Stitt
J Biol Chem. 2009 Dec 4; 284(49): 33773–33780. Published online 2009 Oct 16. doi: 10.1074/jbc.M109.056473
PMCID:
PMC2797146
AbstractArticlePDF–1.8M
20.
Running in reverse: the structural basis for translocation polarity in hexameric helicases
Nathan D. Thomsen, James M. Berger
Cell. Author manuscript; available in PMC 2010 Oct 30.
Published in final edited form as: Cell. 2009 Oct 30; 139(3): 523–534. doi: 10.1016/j.cell.2009.08.043
PMCID:
PMC2772833
AbstractArticlePDF–5.8M

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