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Items: 1 to 20 of 54

1.
K48- and K63-linked ubiquitin chain interactome reveals branch- and length-specific ubiquitin interactors
Anita Waltho, Oliver Popp, Christopher Lenz, Lukas Pluska, Mahil Lambert, Volker Dötsch, Philipp Mertins, Thomas Sommer
Life Sci Alliance. 2024 Aug; 7(8): e202402740. Published online 2024 May 21. doi: 10.26508/lsa.202402740
PMCID:
PMC11109483
AbstractArticlePDF–2.9M
2.
Elf1 promotes Rad26’s interaction with lesion-arrested Pol II for transcription-coupled repair
Reta D. Sarsam, Jun Xu, Indrajit Lahiri, Wenzhi Gong, Qingrong Li, Juntaek Oh, Zhen Zhou, Peini Hou, Jenny Chong, Nan Hao, Shisheng Li, Dong Wang, Andres E. Leschziner
Proc Natl Acad Sci U S A. 2024 Jan 16; 121(3): e2314245121. Published online 2024 Jan 9. doi: 10.1073/pnas.2314245121
PMCID:
PMC10801861
AbstractArticlePDF–3.3M
3.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
4.
Rpb7 represses transcription-coupled nucleotide excision repair
Wenzhi Gong, Shisheng Li
J Biol Chem. 2023 Aug; 299(8): 104969. Published online 2023 Jun 27. doi: 10.1016/j.jbc.2023.104969
PMCID:
PMC10382679
AbstractArticlePDF–5.3M
5.
A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon
Nir Cohen, Naama Aviram, Maya Schuldiner
EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385
PMCID:
PMC10233368
AbstractArticlePDF–1.2M
6.
SWR1 chromatin remodeling complex prevents mitotic slippage during spindle position checkpoint arrest
Ayse Koca Caydasi, Anton Khmelinskii, Zoulfia Darieva, Bahtiyar Kurtulmus, Michael Knop, Gislene Pereira
Mol Biol Cell. 2023 Feb 1; 34(2): ar11. Published online 2023 Jan 13. doi: 10.1091/mbc.E20-03-0179
PMCID:
PMC9930528
AbstractArticlePDF–8.4M
7.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
8.
Regulation of UV damage repair in quiescent yeast cells
Lindsey J. Long, Po-Hsuen Lee, Eric M. Small, Cory Hillyer, Yan Guo, Mary Ann Osley
DNA Repair (Amst) Author manuscript; available in PMC 2021 Feb 18.
Published in final edited form as: DNA Repair (Amst). 2020 Jun; 90: 102861. Published online 2020 Apr 30. doi: 10.1016/j.dnarep.2020.102861
PMCID:
PMC7891302
AbstractArticlePDF–1018K
9.
Histone H4 H75E mutation attenuates global genomic and Rad26-independent transcription-coupled nucleotide excision repair
Kathiresan Selvam, Sheikh Arafatur Rahman, Shisheng Li
Nucleic Acids Res. 2019 Aug 22; 47(14): 7392–7401. Published online 2019 May 22. doi: 10.1093/nar/gkz453
PMCID:
PMC6698655
AbstractArticlePDF–6.4M
10.
The Nup84 complex coordinates the DNA damage response to warrant genome integrity
Hélène Gaillard, José M Santos-Pereira, Andrés Aguilera
Nucleic Acids Res. 2019 May 7; 47(8): 4054–4067. Published online 2019 Feb 4. doi: 10.1093/nar/gkz066
PMCID:
PMC6486642
AbstractArticlePDF–6.3M
11.
Def1 and Dst1 play distinct roles in repair of AP lesions in highly transcribed genomic regions
Norah Owiti, Christopher Lopez, Shivani Singh, Andrei Stephenson, Nayun Kim
DNA Repair (Amst) Author manuscript; available in PMC 2018 Jul 1.
Published in final edited form as: DNA Repair (Amst). 2017 Jul; 55: 31–39. Published online 2017 May 10. doi: 10.1016/j.dnarep.2017.05.003
PMCID:
PMC5815317
AbstractArticlePDF–909K
12.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
13.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
14.
The Genetic Landscape of a Cell
Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Sep 15.
Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823
PMCID:
PMC5600254
AbstractArticlePDF–2.4M
15.
Mapping the Synthetic Dosage Lethality Network of CDK1/CDC28
Christine Zimmermann, Ignacio Garcia, Manja Omerzu, Pierre Chymkowitch, Beibei Zhang, Jorrit M. Enserink
G3 (Bethesda) 2017 Jun; 7(6): 1753–1766. Published online 2017 Apr 18. doi: 10.1534/g3.117.042317
Correction in:
G3 (Bethesda). 2019 Aug; 9(8): 2787.
PMCID:
PMC5473755
AbstractArticlePDF–2.7M
16.
A novel translational control mechanism involving RNA structures within coding sequences
Jennifer Jungfleisch, Danny D. Nedialkova, Ivan Dotu, Katherine E. Sloan, Neus Martinez-Bosch, Lukas Brüning, Emanuele Raineri, Pilar Navarro, Markus T. Bohnsack, Sebastian A. Leidel, Juana Díez
Genome Res. 2017 Jan; 27(1): 95–106. doi: 10.1101/gr.209015.116
Correction in:
Genome Res. 2017 Apr; 27(4): 663.
PMCID:
PMC5204348
AbstractArticlePDF–1.3M
17.
Functional Metabolomics Describes the Yeast Biosynthetic Regulome
Michael Mülleder, Enrica Calvani, Mohammad Tauqeer Alam, Richard Kangda Wang, Florian Eckerstorfer, Aleksej Zelezniak, Markus Ralser
Cell. 2016 Oct 6; 167(2): 553–565.e12. doi: 10.1016/j.cell.2016.09.007
PMCID:
PMC5055083
AbstractArticlePDF–3.9M
18.
Global genome nucleotide excision repair is organized into domains that promote efficient DNA repair in chromatin
Shirong Yu, Katie Evans, Patrick van Eijk, Mark Bennett, Richard M. Webster, Matthew Leadbitter, Yumin Teng, Raymond Waters, Stephen P. Jackson, Simon H. Reed
Genome Res. 2016 Oct; 26(10): 1376–1387. doi: 10.1101/gr.209106.116
PMCID:
PMC5052058
AbstractArticlePDF–1.2M
19.
Sen1, the yeast homolog of human senataxin, plays a more direct role than Rad26 in transcription coupled DNA repair
Wentao Li, Kathiresan Selvam, Sheikh A. Rahman, Shisheng Li
Nucleic Acids Res. 2016 Aug 19; 44(14): 6794–6802. Published online 2016 May 13. doi: 10.1093/nar/gkw428
PMCID:
PMC5001595
AbstractArticlePDF–12M
20.
Mutations at the Subunit Interface of Yeast Proliferating Cell Nuclear Antigen Reveal a Versatile Regulatory Domain
Miklos Halmai, Orsolya Frittmann, Zoltan Szabo, Andreea Daraba, Vamsi K. Gali, Eva Balint, Ildiko Unk
PLoS One. 2016; 11(8): e0161307. Published online 2016 Aug 18. doi: 10.1371/journal.pone.0161307
PMCID:
PMC4990258
AbstractArticlePDF–7.9M

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