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    Items: 1 to 20 of 56

    1.
    Accurate and sensitive interactome profiling using a quantitative protein-fragment complementation assay
    Natalia Lazarewicz, Gaëlle Le Dez, Romina Cerjani, Lunelys Runeshaw, Matthias Meurer, Michael Knop, Robert Wysocki, Gwenaël Rabut
    Cell Rep Methods. 2024 Oct 21; 4(10): 100880. Published online 2024 Oct 21. doi: 10.1016/j.crmeth.2024.100880
    PMCID:
    PMC11573789
    AbstractArticlePDF–4.0M
    2.
    Cadmium binding by the F-box domain induces p97-mediated SCF complex disassembly to activate stress response programs
    Linda Lauinger, Anna Andronicos, Karin Flick, Clinton Yu, Geetha Durairaj, Lan Huang, Peter Kaiser
    Nat Commun. 2024; 15: 3894. Published online 2024 May 8. doi: 10.1038/s41467-024-48184-6
    PMCID:
    PMC11079001
    AbstractArticlePDF–2.4M
    3.
    Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
    Michael J. O’Brien, Athar Ansari
    Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
    Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
    PMCID:
    PMC10872477
    AbstractArticlePDF–1.7M
    4.
    The social and structural architecture of the yeast protein interactome
    André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
    Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
    PMCID:
    PMC10700138
    AbstractArticlePDF–20M
    5.
    Misregulation of cell cycle-dependent methylation of budding yeast CENP-A contributes to chromosomal instability
    Prashant K. Mishra, Wei-Chun Au, Pedro G. Castineira, Nazrin Ali, John Stanton, Lars Boeckmann, Yoshimitsu Takahashi, Michael Costanzo, Charles Boone, Kerry S. Bloom, Peter H. Thorpe, Munira A. Basrai
    Mol Biol Cell. 2023 Sep 1; 34(10): ar99. Published online 2023 Aug 17. doi: 10.1091/mbc.E23-03-0108
    PMCID:
    PMC10551700
    AbstractArticlePDF–3.7M
    6.
    A balancing act: interactions within NuA4/TIP60 regulate picNuA4 function in Saccharomyces cerevisiae and humans
    Phoebe Y T Lu, Alyssa C Kirlin, Maria J Aristizabal, Hilary T Brewis, Nancy Lévesque, Dheva T Setiaputra, Nikita Avvakumov, Joris J Benschop, Marian Groot Koerkamp, Frank C P Holstege, Nevan J Krogan, Calvin K Yip, Jacques Côté, Michael S Kobor
    Genetics. 2022 Nov; 222(3): iyac136. Published online 2022 Sep 6. doi: 10.1093/genetics/iyac136
    PMCID:
    PMC9630986
    AbstractArticlePDF–2.2M
    7.
    New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
    Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
    Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
    PMCID:
    PMC9209811
    AbstractArticlePDF–818K
    8.
    Downregulation of autophagy by Met30-mediated Atg9 ubiquitination
    Yuchen Feng, Aileen R. Ariosa, Ying Yang, Zehan Hu, Jörn Dengjel, Daniel J. Klionsky
    Proc Natl Acad Sci U S A. 2021 Jan 5; 118(1): e2005539118. Published online 2020 Dec 21. doi: 10.1073/pnas.2005539118
    PMCID:
    PMC7817162
    AbstractArticlePDF–1.2M
    9.
    Comprehensive Synthetic Genetic Array Analysis of Alleles That Interact with Mutation of the Saccharomyces cerevisiae RecQ Helicases Hrq1 and Sgs1
    Elsbeth Sanders, Phoebe A. Nguyen, Cody M. Rogers, Matthew L. Bochman
    G3 (Bethesda) 2020 Dec; 10(12): 4359–4368. Published online 2020 Oct 28. doi: 10.1534/g3.120.401709
    PMCID:
    PMC7718751
    AbstractArticlePDF–1.2M
    10.
    Cdc48 cofactor Shp1 regulates signal-induced SCFMet30 disassembly
    Linda Lauinger, Karin Flick, James L. Yen, Radhika Mathur, Peter Kaiser
    Proc Natl Acad Sci U S A. 2020 Sep 1; 117(35): 21319–21327. Published online 2020 Aug 18. doi: 10.1073/pnas.1922891117
    PMCID:
    PMC7474596
    AbstractArticlePDF–1.8M
    11.
    Skp, Cullin, F-box (SCF)-Met30 and SCF-Cdc4-Mediated Proteolysis of CENP-A Prevents Mislocalization of CENP-A for Chromosomal Stability in Budding Yeast
    Wei-Chun Au, Tianyi Zhang, Prashant K. Mishra, Jessica R. Eisenstatt, Robert L. Walker, Josefina Ocampo, Anthony Dawson, Jack Warren, Michael Costanzo, Anastasia Baryshnikova, Karin Flick, David J. Clark, Paul S. Meltzer, Richard E. Baker, Chad Myers, Charles Boone, Peter Kaiser, Munira A. Basrai
    PLoS Genet. 2020 Feb; 16(2): e1008597. Published online 2020 Feb 7. doi: 10.1371/journal.pgen.1008597
    PMCID:
    PMC7032732
    AbstractArticlePDF–3.9M
    12.
    Saccharomyces cerevisiae Gle2/Rae1 is involved in septin organization, essential for cell cycle progression
    Gesa Zander, Wilfried Kramer, Anika Seel, Heike Krebber
    Yeast. 2017 Nov; 34(11): 459–470. Published online 2017 Sep 28. doi: 10.1002/yea.3249
    PMCID:
    PMC6472880
    AbstractArticlePDF–1.9M
    13.
    Effects of Acetylation and Phosphorylation on Subunit Interactions in Three Large Eukaryotic Complexes
    Nikolina Šoštarić, Francis J. O'Reilly, Piero Giansanti, Albert J. R. Heck, Anne-Claude Gavin, Vera van Noort
    Mol Cell Proteomics. 2018 Dec; 17(12): 2387–2401. Published online 2018 Sep 4. doi: 10.1074/mcp.RA118.000892
    PMCID:
    PMC6283292
    AbstractArticlePDF–2.2M
    14.
    Global analysis of genetic circuitry and adaptive mechanisms enabling resistance to the azole antifungal drugs
    Harley O’Connor Mount, Nicole M. Revie, Robert T. Todd, Kaitlin Anstett, Cathy Collins, Michael Costanzo, Charles Boone, Nicole Robbins, Anna Selmecki, Leah E. Cowen
    PLoS Genet. 2018 Apr; 14(4): e1007319. Published online 2018 Apr 27. doi: 10.1371/journal.pgen.1007319
    PMCID:
    PMC5922528
    AbstractArticlePDF–7.1M
    15.
    Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
    Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
    G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
    PMCID:
    PMC5765359
    AbstractArticlePDF–2.2M
    16.
    A global interaction network maps a wiring diagram of cellular function
    Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
    Science. Author manuscript; available in PMC 2017 Oct 30.
    Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
    PMCID:
    PMC5661885
    AbstractArticlePDF–2.6M
    17.
    The Genetic Landscape of a Cell
    Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone
    Science. Author manuscript; available in PMC 2017 Sep 15.
    Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823
    PMCID:
    PMC5600254
    AbstractArticlePDF–2.4M
    18.
    A novel translational control mechanism involving RNA structures within coding sequences
    Jennifer Jungfleisch, Danny D. Nedialkova, Ivan Dotu, Katherine E. Sloan, Neus Martinez-Bosch, Lukas Brüning, Emanuele Raineri, Pilar Navarro, Markus T. Bohnsack, Sebastian A. Leidel, Juana Díez
    Genome Res. 2017 Jan; 27(1): 95–106. doi: 10.1101/gr.209015.116
    Correction in:
    Genome Res. 2017 Apr; 27(4): 663.
    PMCID:
    PMC5204348
    AbstractArticlePDF–1.3M
    19.
    An inter‐species protein–protein interaction network across vast evolutionary distance
    Quan Zhong, Samuel J Pevzner, Tong Hao, Yang Wang, Roberto Mosca, Jörg Menche, Mikko Taipale, Murat Taşan, Changyu Fan, Xinping Yang, Patrick Haley, Ryan R Murray, Flora Mer, Fana Gebreab, Stanley Tam, Andrew MacWilliams, Amélie Dricot, Patrick Reichert, Balaji Santhanam, Lila Ghamsari, Michael A Calderwood, Thomas Rolland, Benoit Charloteaux, Susan Lindquist, Albert‐László Barabási, David E Hill, Patrick Aloy, Michael E Cusick, Yu Xia, Frederick P Roth, Marc Vidal
    Mol Syst Biol. 2016 Apr; 12(4): 865. Published online 2016 Apr 23. doi: 10.15252/msb.20156484
    PMCID:
    PMC4848758
    AbstractArticlePDF–2.1M
    20.
    Skp1 Independent Function of Cdc53/Cul1 in F-box Protein Homeostasis
    Radhika Mathur, James L. Yen, Peter Kaiser
    PLoS Genet. 2015 Dec; 11(12): e1005727. Published online 2015 Dec 10. doi: 10.1371/journal.pgen.1005727
    PMCID:
    PMC4675558
    AbstractArticlePDF–4.3M

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