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Items: 1 to 20 of 83

1.
Alternative translation initiation by ribosomal leaky scanning produces multiple isoforms of the Pif1 helicase
Tomas Lama-Diaz, Miguel G Blanco
Nucleic Acids Res. 2024 Jul 8; 52(12): 6928–6944. Published online 2024 May 23. doi: 10.1093/nar/gkae400
PMCID:
PMC11229318
AbstractArticlePDF–2.6M
2.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
3.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
4.
The Hsp90 molecular chaperone governs client proteins by targeting intrinsically disordered regions
Janhavi A. Kolhe, Neethu L. Babu, Brian C. Freeman
Mol Cell. Author manuscript; available in PMC 2024 Jun 15.
Published in final edited form as: Mol Cell. 2023 Jun 15; 83(12): 2035–2044.e7. Published online 2023 Jun 8. doi: 10.1016/j.molcel.2023.05.021
PMCID:
PMC10297700
AbstractArticlePDF–2.0M
5.
Systematic mutagenesis of TFIIH subunit p52/Tfb2 identifies residues required for XPB/Ssl2 subunit function and genetic interactions with TFB6
Jacob Bassett, Jenna K. Rimel, Shrabani Basu, Pratik Basnet, Jie Luo, Krysta L. Engel, Michael Nagel, Alexander Woyciehowsky, Christopher C. Ebmeier, Craig D. Kaplan, Dylan J. Taatjes, Jeffrey A. Ranish
J Biol Chem. 2022 Oct; 298(10): 102433. Published online 2022 Aug 28. doi: 10.1016/j.jbc.2022.102433
PMCID:
PMC9557730
AbstractArticlePDF–4.6M
6.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
7.
The histone chaperone Spt6 is required for normal recruitment of the capping enzyme Abd1 to transcribed regions
Rajaraman Gopalakrishnan, Fred Winston
J Biol Chem. 2021 Oct; 297(4): 101205. Published online 2021 Sep 17. doi: 10.1016/j.jbc.2021.101205
PMCID:
PMC8511950
AbstractArticlePDF–3.1M
8.
Spt4 facilitates the movement of RNA polymerase II through the +2 nucleosomal barrier
Ülkü Uzun, Thomas Brown, Harry Fischl, Andrew Angel, Jane Mellor
Cell Rep. 2021 Sep 28; 36(13): 109755. Published online 2021 Sep 29. doi: 10.1016/j.celrep.2021.109755
PMCID:
PMC8492961
AbstractArticle
9.
The role of XPB/Ssl2 dsDNA translocation processivity in transcription-start-site scanning.
Eric J. Tomko, Olivia Luyties, Jenna K. Rimel, Chi-Lin Tsai, Jill O. Fuss, James Fishburn, Steven Hahn, Susan E. Tsutakawa, Dylan J. Taatjes, Eric A. Galburt
J Mol Biol. Author manuscript; available in PMC 2022 Jul 9.
Published in final edited form as: J Mol Biol. 2021 Jul 9; 433(14): 166813. Published online 2021 Jan 13. doi: 10.1016/j.jmb.2021.166813
PMCID:
PMC8327364
AbstractArticlePDF–1.1M
10.
Cryo-EM structure of TFIIH/Rad4–Rad23–Rad33 in damaged DNA opening in nucleotide excision repair
Trevor van Eeuwen, Yoonjung Shim, Hee Jong Kim, Tingting Zhao, Shrabani Basu, Benjamin A. Garcia, Craig D. Kaplan, Jung-Hyun Min, Kenji Murakami
Nat Commun. 2021; 12: 3338. Published online 2021 Jun 7. doi: 10.1038/s41467-021-23684-x
PMCID:
PMC8184850
AbstractArticlePDF–6.1M
11.
Comprehensive Synthetic Genetic Array Analysis of Alleles That Interact with Mutation of the Saccharomyces cerevisiae RecQ Helicases Hrq1 and Sgs1
Elsbeth Sanders, Phoebe A. Nguyen, Cody M. Rogers, Matthew L. Bochman
G3 (Bethesda) 2020 Dec; 10(12): 4359–4368. Published online 2020 Oct 28. doi: 10.1534/g3.120.401709
PMCID:
PMC7718751
AbstractArticlePDF–1.2M
12.
Homologous recombination and Mus81 promote replication completion in response to replication fork blockage
Benjamin Pardo, María Moriel‐Carretero, Thibaud Vicat, Andrés Aguilera, Philippe Pasero
EMBO Rep. 2020 Jul 3; 21(7): e49367. Published online 2020 May 17. doi: 10.15252/embr.201949367
PMCID:
PMC7332989
AbstractArticlePDF–2.6M
13.
Chaperone-Mediated Protein Disaggregation Triggers Proteolytic Clearance of Intra-nuclear Protein Inclusions
Fabian den Brave, Lucas V. Cairo, Chandhuru Jagadeesan, Carmen Ruger-Herreros, Axel Mogk, Bernd Bukau, Stefan Jentsch
Cell Rep. 2020 Jun 2; 31(9): 107680. Published online 2020 Jun 2. doi: 10.1016/j.celrep.2020.107680
PMCID:
PMC7273177
AbstractArticle
14.
Rpd3L and Hda1 histone deacetylases facilitate repair of broken forks by promoting sister chromatid cohesion
Pedro Ortega, Belén Gómez-González, Andrés Aguilera
Nat Commun. 2019; 10: 5178. Published online 2019 Nov 15. doi: 10.1038/s41467-019-13210-5
PMCID:
PMC6858524
AbstractArticlePDF–2.1M
15.
The Nup84 complex coordinates the DNA damage response to warrant genome integrity
Hélène Gaillard, José M Santos-Pereira, Andrés Aguilera
Nucleic Acids Res. 2019 May 7; 47(8): 4054–4067. Published online 2019 Feb 4. doi: 10.1093/nar/gkz066
PMCID:
PMC6486642
AbstractArticlePDF–6.3M
16.
Structures of transcription pre-initiation complex with TFIIH and Mediator
S. Schilbach, M. Hantsche, D. Tegunov, C. Dienemann, C. Wigge, H. Urlaub, P. Cramer
Nature. Author manuscript; available in PMC 2018 Aug 6.
Published in final edited form as: Nature. 2017 Nov 9; 551(7679): 204–209. Published online 2017 Nov 1. doi: 10.1038/nature24282
PMCID:
PMC6078178
AbstractArticlePDF–9.2M
17.
Yeast-based assays for characterization of the functional effects of single nucleotide polymorphisms in human DNA repair genes
Changshin Kim, Jinmo Yang, Su-Hyun Jeong, Hayoung Kim, Geun-hee Park, Hwa Beom Shin, MyungJa Ro, Kyoung-Yeon Kim, YoungJoon Park, Keun Pil Kim, KyuBum Kwack
PLoS One. 2018; 13(3): e0193823. Published online 2018 Mar 9. doi: 10.1371/journal.pone.0193823
PMCID:
PMC5844570
AbstractArticlePDF–25M
18.
Def1 interacts with TFIIH and modulates RNA polymerase II transcription
Nivedita Damodaren, Trevor Van Eeuwen, Joanna Zamel, Enrique Lin-Shiao, Nir Kalisman, Kenji Murakami
Proc Natl Acad Sci U S A. 2017 Dec 12; 114(50): 13230–13235. Published online 2017 Nov 27. doi: 10.1073/pnas.1707955114
PMCID:
PMC5740667
AbstractArticlePDF–1.2M
19.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
20.
Structure of a Complete Mediator-RNA Polymerase II Pre-Initiation Complex
Philip J. Robinson, Michael J. Trnka, David A. Bushnell, Ralph Davis, Pierre-Jean Mattei, Alma L. Burlingame, Roger D. Kornberg
Cell. Author manuscript; available in PMC 2017 Sep 8.
Published in final edited form as: Cell. 2016 Sep 8; 166(6): 1411–1422.e16. doi: 10.1016/j.cell.2016.08.050
PMCID:
PMC5589196
AbstractArticlePDF–1.5M

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