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Items: 1 to 20 of 69

1.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
2.
Long-range DNA end resection supports homologous recombination by checkpoint activation rather than extensive homology generation
Michael T Kimble, Matthew J Johnson, Mattie R Nester, Lorraine S Symington
eLife. 2023; 12: e84322. Published online 2023 Jun 30. doi: 10.7554/eLife.84322
PMCID:
PMC10400078
AbstractArticlePDF–3.7M
3.
A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon
Nir Cohen, Naama Aviram, Maya Schuldiner
EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385
PMCID:
PMC10233368
AbstractArticlePDF–1.2M
4.
A DNA damage–induced phosphorylation circuit enhances Mec1ATR Ddc2ATRIP recruitment to Replication Protein A
Luke A. Yates, Elias A. Tannous, R. Marc Morgan, Peter M. Burgers, Xiaodong Zhang
Proc Natl Acad Sci U S A. 2023 Apr 4; 120(14): e2300150120. Published online 2023 Mar 30. doi: 10.1073/pnas.2300150120
PMCID:
PMC10083555
AbstractArticlePDF–2.3M
5.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
6.
The peroxisomal exportomer directly inhibits phosphoactivation of the pexophagy receptor Atg36 to suppress pexophagy in yeast
Houqing Yu, Roarke A Kamber, Vladimir Denic
eLife. 2022; 11: e74531. Published online 2022 Apr 11. doi: 10.7554/eLife.74531
PMCID:
PMC9000956
AbstractArticlePDF–1.0M
7.
VID22 counteracts G-quadruplex-induced genome instability
Elena Galati, Maria C Bosio, Daniele Novarina, Matteo Chiara, Giulia M Bernini, Alessandro M Mozzarelli, Maria L García-Rubio, Belén Gómez-González, Andrés Aguilera, Thomas Carzaniga, Marco Todisco, Tommaso Bellini, Giulia M Nava, Gianmaria Frigè, Sarah Sertic, David S Horner, Anastasia Baryshnikova, Caterina Manzari, Anna M D’Erchia, Graziano Pesole, Grant W Brown, Marco Muzi-Falconi, Federico Lazzaro
Nucleic Acids Res. 2021 Dec 16; 49(22): 12785–12804. Published online 2021 Dec 6. doi: 10.1093/nar/gkab1156
PMCID:
PMC8682794
AbstractArticlePDF–8.0M
8.
Antagonistic relationship of NuA4 with the non-homologous end-joining machinery at DNA damage sites
Salar Ahmad, Valérie Côté, Xue Cheng, Gaëlle Bourriquen, Vasileia Sapountzi, Mohammed Altaf, Jacques Côté
PLoS Genet. 2021 Sep; 17(9): e1009816. Published online 2021 Sep 20. doi: 10.1371/journal.pgen.1009816
PMCID:
PMC8483352
AbstractArticlePDF–2.7M
9.
Rad9, a 53BP1 Ortholog of Budding Yeast, Is Insensitive to Spo11-Induced Double-Strand Breaks During Meiosis
Takehiko Usui, Akira Shinohara
Front Cell Dev Biol. 2021; 9: 635383. Published online 2021 Mar 25. doi: 10.3389/fcell.2021.635383
PMCID:
PMC8027355
AbstractArticlePDF–1.4M
10.
Mechanism of Auto-inhibition and Activation of Mec1ATR Checkpoint Kinase
Elias A. Tannous, Luke A. Yates, Xiaodong Zhang, Peter M. Burgers
Nat Struct Mol Biol. Author manuscript; available in PMC 2021 May 9.
Published in final edited form as: Nat Struct Mol Biol. 2021 Jan; 28(1): 50–61. Published online 2020 Nov 9. doi: 10.1038/s41594-020-00522-0
PMCID:
PMC7855233
AbstractArticlePDF–7.5M
11.
Yeast ATM and ATR kinases use different mechanisms to spread histone H2A phosphorylation around a DNA double-strand break
Kevin Li, Gabriel Bronk, Jane Kondev, James E. Haber
Proc Natl Acad Sci U S A. 2020 Sep 1; 117(35): 21354–21363. Published online 2020 Aug 17. doi: 10.1073/pnas.2002126117
PMCID:
PMC7474660
AbstractArticlePDF–1.8M
12.
Mec1ATR autophosphorylation and Ddc2ATRIP phosphorylation regulates DNA damage checkpoint signaling
Gonen Memisoglu, Michael C. Lanz, Vinay V. Eapen, Jacqueline M. Jordan, Kihoon Lee, Marcus B. Smolka, James E. Haber
Cell Rep. Author manuscript; available in PMC 2020 May 13.
Published in final edited form as: Cell Rep. 2019 Jul 23; 28(4): 1090–1102.e3. doi: 10.1016/j.celrep.2019.06.068
PMCID:
PMC7218798
AbstractArticlePDF–2.0M
13.
Ddc2ATRIP promotes Mec1ATR activation at RPA-ssDNA tracts
Himadri Biswas, Greicy Goto, Weibin Wang, Patrick Sung, Katsunori Sugimoto
PLoS Genet. 2019 Aug; 15(8): e1008294. Published online 2019 Aug 1. doi: 10.1371/journal.pgen.1008294
PMCID:
PMC6692047
AbstractArticlePDF–2.6M
14.
Live cell monitoring of double strand breaks in S. cerevisiae
David P. Waterman, Felix Zhou, Kevin Li, Cheng-Sheng Lee, Michael Tsabar, Vinay V. Eapen, Allison Mazzella, James E. Haber
PLoS Genet. 2019 Mar; 15(3): e1008001. Published online 2019 Mar 1. doi: 10.1371/journal.pgen.1008001
PMCID:
PMC6415866
AbstractArticlePDF–2.9M
15.
Phospho-dependent recruitment of the yeast NuA4 acetyltransferase complex by MRX at DNA breaks regulates RPA dynamics during resection
Xue Cheng, Olivier Jobin-Robitaille, Pierre Billon, Rémi Buisson, Hengyao Niu, Nicolas Lacoste, Nebiyu Abshiru, Valérie Côté, Pierre Thibault, Stephen J. Kron, Patrick Sung, Christopher J. Brandl, Jean-Yves Masson, Jacques Côté
Proc Natl Acad Sci U S A. 2018 Oct 2; 115(40): 10028–10033. Published online 2018 Sep 17. doi: 10.1073/pnas.1806513115
PMCID:
PMC6176631
AbstractArticlePDF–1.1M
16.
Functional Impact of the H2A.Z Histone Variant During Meiosis in Saccharomyces cerevisiae
Sara González-Arranz, Santiago Cavero, Macarena Morillo-Huesca, Eloisa Andújar, Mónica Pérez-Alegre, Félix Prado, Pedro San-Segundo
Genetics. 2018 Aug; 209(4): 997–1015. Published online 2018 May 31. doi: 10.1534/genetics.118.301110
PMCID:
PMC6063244
AbstractArticlePDF–2.6M
17.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
18.
Yeast PP4 Interacts with ATR Homolog Ddc2-Mec1 and Regulates Checkpoint Signaling
Nicole Hustedt, Andrew Seeber, Ragna Sack, Monika Tsai-Pflugfelder, Bhupinder Bhullar, Hanneke Vlaming, Fred van Leeuwen, Aude Guénolé, Haico van Attikum, Rohith Srivas, Trey Ideker, Kenji Shimada, Susan M. Gasser
Mol Cell. Author manuscript; available in PMC 2017 Nov 29.
Published in final edited form as: Mol Cell. 2015 Jan 22; 57(2): 273–289. Published online 2014 Dec 18. doi: 10.1016/j.molcel.2014.11.016
PMCID:
PMC5706562
AbstractArticlePDF–1.2M
19.
A novel translational control mechanism involving RNA structures within coding sequences
Jennifer Jungfleisch, Danny D. Nedialkova, Ivan Dotu, Katherine E. Sloan, Neus Martinez-Bosch, Lukas Brüning, Emanuele Raineri, Pilar Navarro, Markus T. Bohnsack, Sebastian A. Leidel, Juana Díez
Genome Res. 2017 Jan; 27(1): 95–106. doi: 10.1101/gr.209015.116
Correction in:
Genome Res. 2017 Apr; 27(4): 663.
PMCID:
PMC5204348
AbstractArticlePDF–1.3M
20.
The Dimeric Architecture of Checkpoint Kinases Mec1ATR and Tel1ATM Reveal a Common Structural Organization
Marta Sawicka, Paulina H. Wanrooij, Vidya C. Darbari, Elias Tannous, Sarem Hailemariam, Daniel Bose, Alena V. Makarova, Peter M. Burgers, Xiaodong Zhang
J Biol Chem. 2016 Jun 24; 291(26): 13436–13447. Published online 2016 Apr 28. doi: 10.1074/jbc.M115.708263
PMCID:
PMC4919432
AbstractArticlePDF–2.9M

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