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Items: 1 to 20 of 53

1.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
2.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
3.
The VINE complex is an endosomal VPS9-domain GEF and SNX-BAR coat
Shawn P Shortill, Mia S Frier, Ponthakorn Wongsangaroonsri, Michael Davey, Elizabeth Conibear
eLife. 2022; 11: e77035. Published online 2022 Aug 8. doi: 10.7554/eLife.77035
PMCID:
PMC9507130
AbstractArticlePDF–6.1M
4.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
5.
Subunit exchange among endolysosomal tethering complexes is linked to contact site formation at the vacuole
Ayelén González Montoro, Prado Vargas Duarte, Kathrin Auffarth, Stefan Walter, Florian Fröhlich, Christian Ungermann
Mol Biol Cell. 2021 Dec 1; 32(22): br14. doi: 10.1091/mbc.E21-05-0227
PMCID:
PMC8694092
AbstractArticlePDF–1.3M
6.
Fur4‐mediated uracil‐scavenging to screen for surface protein regulators
Katherine M. Paine, Gabrielle B. Ecclestone, Chris MacDonald
Traffic. 2021 Nov; 22(11): 397–408. Published online 2021 Sep 23. doi: 10.1111/tra.12815
PMCID:
PMC8650575
AbstractArticlePDF–25M
7.
Rab5-independent activation and function of yeast Rab7-like protein, Ypt7p, in the AP-3 pathway
Hiroki Shimamura, Makoto Nagano, Keita Nakajima, Junko Y. Toshima, Jiro Toshima
PLoS One. 2019; 14(1): e0210223. Published online 2019 Jan 25. doi: 10.1371/journal.pone.0210223
PMCID:
PMC6347229
AbstractArticlePDF–3.4M
8.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
9.
Architecture and dynamics of overlapped RNA regulatory networks
Christopher P. Lapointe, Melanie A. Preston, Daniel Wilinski, Harriet A.J. Saunders, Zachary T. Campbell, Marvin Wickens
RNA. 2017 Nov; 23(11): 1636–1647. doi: 10.1261/rna.062687.117
PMCID:
PMC5648032
AbstractArticlePDF–6.6M
10.
The Genetic Landscape of a Cell
Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Sep 15.
Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823
PMCID:
PMC5600254
AbstractArticlePDF–2.4M
11.
A novel translational control mechanism involving RNA structures within coding sequences
Jennifer Jungfleisch, Danny D. Nedialkova, Ivan Dotu, Katherine E. Sloan, Neus Martinez-Bosch, Lukas Brüning, Emanuele Raineri, Pilar Navarro, Markus T. Bohnsack, Sebastian A. Leidel, Juana Díez
Genome Res. 2017 Jan; 27(1): 95–106. doi: 10.1101/gr.209015.116
Correction in:
Genome Res. 2017 Apr; 27(4): 663.
PMCID:
PMC5204348
AbstractArticlePDF–1.3M
12.
Functional Metabolomics Describes the Yeast Biosynthetic Regulome
Michael Mülleder, Enrica Calvani, Mohammad Tauqeer Alam, Richard Kangda Wang, Florian Eckerstorfer, Aleksej Zelezniak, Markus Ralser
Cell. 2016 Oct 6; 167(2): 553–565.e12. doi: 10.1016/j.cell.2016.09.007
PMCID:
PMC5055083
AbstractArticlePDF–3.9M
13.
A conserved quality-control pathway that mediates degradation of unassembled ribosomal proteins
Min-Kyung Sung, Tanya R Porras-Yakushi, Justin M Reitsma, Ferdinand M Huber, Michael J Sweredoski, André Hoelz, Sonja Hess, Raymond J Deshaies
eLife. 2016; 5: e19105. Published online 2016 Aug 23. doi: 10.7554/eLife.19105
PMCID:
PMC5026473
AbstractArticlePDF–4.2M
14.
Target of rapamycin signaling mediates vacuolar fission caused by endoplasmic reticulum stress in Saccharomyces cerevisiae
Bobbiejane Stauffer, Ted Powers
Mol Biol Cell. 2015 Dec 15; 26(25): 4618–4630. doi: 10.1091/mbc.E15-06-0344
PMCID:
PMC4678019
AbstractArticlePDF–1.8M
15.
Saccharomyces cerevisiae Is Dependent on Vesicular Traffic between the Golgi Apparatus and the Vacuole When Inositolphosphorylceramide Synthase Aur1 Is Inactivated
Natalia S. Voynova, Carole Roubaty, Hector M. Vazquez, Shamroop K. Mallela, Christer S. Ejsing, Andreas Conzelmann
Eukaryot Cell. 2015 Dec; 14(12): 1203–1216. Prepublished online 2015 Oct 2. Published online 2015 Nov 30. doi: 10.1128/EC.00117-15
PMCID:
PMC4664882
AbstractArticlePDF–2.3M
16.
Spatiotemporal dynamics of membrane remodeling and fusion proteins during endocytic transport
Henning Arlt, Kathrin Auffarth, Rainer Kurre, Dominik Lisse, Jacob Piehler, Christian Ungermann
Mol Biol Cell. 2015 Apr 1; 26(7): 1357–1370. doi: 10.1091/mbc.E14-08-1318
PMCID:
PMC4454181
AbstractArticlePDF–2.5M
17.
A Vps21 endocytic module regulates autophagy
Yong Chen, Fan Zhou, Shenshen Zou, Sidney Yu, Shaoshan Li, Dan Li, Jingzhen Song, Hui Li, Zhiyi He, Bing Hu, Lars Olof Björn, Zhanna Lipatova, Yongheng Liang, Zhiping Xie, Nava Segev
Mol Biol Cell. 2014 Oct 15; 25(20): 3166–3177. doi: 10.1091/mbc.E14-04-0917
PMCID:
PMC4196867
AbstractArticlePDF–1.7M
18.
Components of Golgi-to-vacuole trafficking are required for nitrogen- and TORC1-responsive regulation of the yeast GATA factors
Mohammad Fayyadkazan, Jennifer J Tate, Fabienne Vierendeels, Terrance G Cooper, Evelyne Dubois, Isabelle Georis
Microbiologyopen. 2014 Jun; 3(3): 271–287. Published online 2014 Mar 18. doi: 10.1002/mbo3.168
PMCID:
PMC4082702
AbstractArticlePDF–1.0M
19.
Endolysosomal Membrane Trafficking Complexes Drive Nutrient-Dependent TORC1 Signaling to Control Cell Growth in Saccharomyces cerevisiae
Joanne M. Kingsbury, Neelam D. Sen, Tatsuya Maeda, Joseph Heitman, Maria E. Cardenas
Genetics. 2014 Apr; 196(4): 1077–1089. Published online 2014 Feb 10. doi: 10.1534/genetics.114.161646
PMCID:
PMC3982701
AbstractArticlePDF–2.2M
20.
The RAVE complex is an isoform-specific V-ATPase assembly factor in yeast
Anne M. Smardon, Heba I. Diab, Maureen Tarsio, Theodore T. Diakov, Negin Dehdar Nasab, Robert W. West, Patricia M. Kane
Mol Biol Cell. 2014 Feb 1; 25(3): 356–367. doi: 10.1091/mbc.E13-05-0231
PMCID:
PMC3907276
AbstractArticlePDF–1.2M

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