PMC Links for GEO Profiles (Select 571877) - PMC

Select item 41238551.

The binary protein-protein interaction landscape of Escherichia coli

Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz

Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.

Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831

PMCID:: PMC4123855

Abstract Article PDF–1.1M

Select item 26726142.

Global Functional Atlas of Escherichia coli Encompassing Previously Uncharacterized Proteins

Pingzhao Hu, Sarath Chandra Janga, Mohan Babu, J. Javier Díaz-Mejía, Gareth Butland, Wenhong Yang, Oxana Pogoutse, Xinghua Guo, Sadhna Phanse, Peter Wong, Shamanta Chandran, Constantine Christopoulos, Anaies Nazarians-Armavil, Negin Karimi Nasseri, Gabriel Musso, Mehrab Ali, Nazila Nazemof, Veronika Eroukova, Ashkan Golshani, Alberto Paccanaro, Jack F Greenblatt, Gabriel Moreno-Hagelsieb, Andrew Emili

PLoS Biol. 2009 Apr; 7(4): e1000096. Published online 2009 Apr 28. doi: 10.1371/journal.pbio.1000096

PMCID:: PMC2672614

Abstract Article

Select item 16814813.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Abstract Article PDF–141K

Select item 13252004.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405

PMCID:: PMC1325200

Abstract Article PDF–204K

Select item 12185355.

Larger increases in sensitivity to paracatalytic inactivation than in catalytic competence during experimental evolution of the second beta-galactosidase of Escherichia coli.

S V Calugaru, S Krishnan, C J Chany, 2nd, B G Hall, M L Sinnott

Biochem J. 1997 Jul 1; 325(Pt 1): 117–121. doi: 10.1042/bj3250117

PMCID:: PMC1218535

Summary PDF–376K

Select item 12138486.

Experimental Evolution of a New Enzymatic Function. II. Evolution of Multiple Functions for EBG Enzyme in E. COLI

Barry G. Hall

Genetics. 1978 Jul; 89(3): 453–465. doi: 10.1093/genetics/89.3.453

PMCID:: PMC1213848

Summary PDF–843K

Select item 12038767.

DNA Sequence Analysis of Artificially Evolved Ebg Enzyme and Ebg Repressor Genes

B. G. Hall, P. W. Betts, J. C. Wootton

Genetics. 1989 Dec; 123(4): 635–648. doi: 10.1093/genetics/123.4.635

PMCID:: PMC1203876

Summary PDF–1.2M

Select item 12018658.

Evolution of a Regulated Operon in the Laboratory

Barry G. Hall

Genetics. 1982 Jul; 101(3-4): 335–344. doi: 10.1093/genetics/101.3-4.335

PMCID:: PMC1201865

Summary PDF–707K

Select item 11386329.

The catalytic consequences of experimental evolution. Transition-state structure during catalysis by the evolved beta-galactosidases of Escherichia coli (ebg enzymes) changed by a single mutational event.

B F Li, D Holdup, C A Morton, M L Sinnott

Biochem J. 1989 May 15; 260(1): 109–114. doi: 10.1042/bj2600109

PMCID:: PMC1138632

Summary Page Browse PDF–1.0M

Select item 113625610.

Catalysis by the large subunit of the second beta-galactosidase of Escherichia coli in the absence of the small subunit.

S V Calugaru, B G Hall, M L Sinnott

Biochem J. 1995 Nov 15; 312(Pt 1): 281–286. doi: 10.1042/bj3120281

PMCID:: PMC1136256

Summary Page Browse PDF–1.1M

Select item 113620811.

Catalytic consequences of experimental evolution: catalysis by a 'third-generation' evolvant of the second beta-galactosidase of Escherichia coli, ebgabcde, and by ebgabcd, a 'second-generation' evolvant containing two supposedly 'kinetically silent' mutations.

S Krishnan, B G Hall, M L Sinnott

Biochem J. 1995 Dec 15; 312(Pt 3): 971–977. doi: 10.1042/bj3120971

PMCID:: PMC1136208

Summary Page Browse PDF–1.3M

Select item 113247312.

Large changes of transition-state structure during experimental evolution of an enzyme.

K Srinivasan, A Konstantinidis, M L Sinnott, B G Hall

Biochem J. 1993 Apr 1; 291(Pt 1): 15–17. doi: 10.1042/bj2910015

PMCID:: PMC1132473

Summary Page Browse PDF–602K

Select item 113090213.

The catalytic consequences of experimental evolution. Studies on the subunit structure of the second (ebg) beta-galactosidase of Escherichia coli, and on catalysis by ebgab, an experimental evolvant containing two amino acid substitutions.

A C Elliott, S K, M L Sinnott, P J Smith, J Bommuswamy, Z Guo, B G Hall, Y Zhang

Biochem J. 1992 Feb 15; 282(Pt 1): 155–164. doi: 10.1042/bj2820155

PMCID:: PMC1130902

Summary Page Browse PDF–2.6M

Select item 43360914.

Evolution of a Second Gene for β-Galactosidase in Escherichia coli

John H. Campbell, Judith A. Lengyel, John Langridge

Proc Natl Acad Sci U S A. 1973 Jun; 70(6): 1841–1845. doi: 10.1073/pnas.70.6.1841

PMCID:: PMC433609

Summary Page Browse PDF–1007K

Select item 34965015.

Evolution of a new enzymatic function by recombination within a gene.

B G Hall, T Zuzel

Proc Natl Acad Sci U S A. 1980 Jun; 77(6): 3529–3533. doi: 10.1073/pnas.77.6.3529

PMCID:: PMC349650

Summary Page Browse PDF–961K

Select item 29479616.

The ebg operon consists of at least two genes.

B G Hall, T Zuzel

J Bacteriol. 1980 Dec; 144(3): 1208–1211. doi: 10.1128/jb.144.3.1208-1211.1980

PMCID:: PMC294796

Summary Page Browse PDF–949K

Select item 29413617.

A mutant Ebg enzyme that converts lactose into an inducer of the lac operon.

S J Rolseth, V A Fried, B G Hall

J Bacteriol. 1980 Jun; 142(3): 1036–1039. doi: 10.1128/jb.142.3.1036-1039.1980

PMCID:: PMC294136

Summary Page Browse PDF–541K

Select item 22009118.

Transgalactosylation activity of ebg beta-galactosidase synthesizes allolactose from lactose.

B G Hall

J Bacteriol. 1982 Apr; 150(1): 132–140. doi: 10.1128/jb.150.1.132-140.1982

PMCID:: PMC220091

Summary Page Browse PDF–1.1M

Select item 21251419.

Application of comparative genomics in the identification and analysis of novel families of membrane-associated receptors in bacteria

Vivek Anantharaman, L Aravind

BMC Genomics. 2003; 4: 34. Published online 2003 Aug 12. doi: 10.1186/1471-2164-4-34

PMCID:: PMC212514

Abstract Article PDF–607K

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