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Items: 17

1.
Isolation, profiling, and tracking of extracellular vesicle cargo in Caenorhabditis elegans
Inna A. Nikonorova, Juan Wang, Alexander L. Cope, Peter E. Tilton, Kaiden M. Power, Jonathon D. Walsh, Jyothi S. Akella, Amber R. Krauchunas, Premal Shah, Maureen M. Barr
Curr Biol. Author manuscript; available in PMC 2023 May 9.
Published in final edited form as: Curr Biol. 2022 May 9; 32(9): 1924–1936.e6. Published online 2022 Mar 24. doi: 10.1016/j.cub.2022.03.005
PMCID:
PMC9491618
AbstractArticlePDF–2.4M
2.
Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules
Patricia Giselle Cipriani, Olivia Bay, John Zinno, Michelle Gutwein, Hin Hark Gan, Vinay K Mayya, George Chung, Jia-Xuan Chen, Hala Fahs, Yu Guan, Thomas F Duchaine, Matthias Selbach, Fabio Piano, Kristin C Gunsalus
eLife. 2021; 10: e60833. Published online 2021 Jul 5. doi: 10.7554/eLife.60833
PMCID:
PMC8331183
AbstractArticlePDF–8.5M
3.
EPIC: Software Toolkit for Elution Profile-Based Inference of Protein Complexes
Lucas ZhongMing Hu, Florian Goebels, June H. Tan, Eric Wolf, Uros Kuzmanov, Cuihong Wan, Sadhna Phanse, Changjiang Xu, Mike Schertzberg, Andrew G. Fraser, Gary D. Bader, Andrew Emili
Nat Methods. Author manuscript; available in PMC 2021 Mar 26.
Published in final edited form as: Nat Methods. 2019 Aug; 16(8): 737–742. Published online 2019 Jul 15. doi: 10.1038/s41592-019-0461-4
PMCID:
PMC7995176
AbstractArticlePDF–1.0M
4.
DNSN-1 recruits GINS for CMG helicase assembly during DNA replication initiation in C. elegans
Yisui Xia, Remi Sonneville, Michael Jenkyn-Bedford, Liqin Ji, Constance Alabert, Ye Hong, Joseph T.P. Yeeles, Karim P.M. Labib
Science. Author manuscript; available in PMC 2023 Sep 23.
Published in final edited form as: Science. 2023 Aug 17; 381(6664): eadi4932. Published online 2023 Aug 17. doi: 10.1126/science.adi4932
PMCID:
PMC7615117
AbstractArticlePDF–3.2M
5.
Germline Maintenance Through the Multifaceted Activities of GLH/Vasa in Caenorhabditis elegans P Granules
Elisabeth A. Marnik, J. Heath Fuqua, Catherine S. Sharp, Jesse D. Rochester, Emily L. Xu, Sarah E. Holbrook, Dustin L. Updike
Genetics. 2019 Nov; 213(3): 923–939. Published online 2019 Sep 10. doi: 10.1534/genetics.119.302670
PMCID:
PMC6827368
AbstractArticlePDF–4.0M
6.
MINA-1 and WAGO-4 are part of regulatory network coordinating germ cell death and RNAi in C. elegans
Ataman Sendoel, Deni Subasic, Luca Ducoli, Martin Keller, Erich Michel, Ines Kohler, Kapil Dev Singh, Xue Zheng, Anneke Brümmer, Jochen Imig, Shivendra Kishore, Yibo Wu, Alexander Kanitz, Andres Kaech, Nitish Mittal, Ana M. Matia-González, André P. Gerber, Mihaela Zavolan, Ruedi Aebersold, Jonathan Hall, Frédéric H.-T. Allain, Michael O. Hengartner
Cell Death Differ. 2019 Oct; 26(10): 2157–2178. Published online 2019 Feb 6. doi: 10.1038/s41418-019-0291-z
PMCID:
PMC6748153
AbstractArticlePDF–5.7M
7.
OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes
Woojin Kim, Ryan S. Underwood, Iva Greenwald, Daniel D. Shaye
Genetics. 2018 Oct; 210(2): 445–461. Published online 2018 Aug 17. doi: 10.1534/genetics.118.301307
PMCID:
PMC6216590
AbstractArticlePDF–1.4M
8.
CUL-2LRR-1 and UBXN-3/FAF1 drive replisome disassembly during DNA replication termination and mitosis
Remi Sonneville, Sara Priego Moreno, Axel Knebel, Clare Johnson, C. James Hastie, Anton Gartner, Agnieszka Gambus, Karim Labib
Nat Cell Biol. Author manuscript; available in PMC 2017 Oct 3.
Published in final edited form as: Nat Cell Biol. 2017 May; 19(5): 468–479. Published online 2017 Apr 3. doi: 10.1038/ncb3500
PMCID:
PMC5410169
AbstractArticlePDF–2.6M
9.
In Vivo Interaction Proteomics in Caenorhabditis elegans Embryos Provides New Insights into P Granule Dynamics
Jia-Xuan Chen, Patricia G. Cipriani, Desirea Mecenas, Jolanta Polanowska, Fabio Piano, Kristin C. Gunsalus, Matthias Selbach
Mol Cell Proteomics. 2016 May; 15(5): 1642–1657. Published online 2016 Feb 24. doi: 10.1074/mcp.M115.053975
PMCID:
PMC4858945
AbstractArticlePDF–3.1M
10.
The ZFP-1(AF10)/DOT-1 Complex Opposes H2B Ubiquitination to Reduce Pol II Transcription
Germano Cecere, Sebastian Hoersch, Morten B. Jensen, Shiv Dixit, Alla Grishok
Mol Cell. Author manuscript; available in PMC 2014 Jun 27.
Published in final edited form as: Mol Cell. 2013 Jun 27; 50(6): 894–907. doi: 10.1016/j.molcel.2013.06.002
PMCID:
PMC3784254
AbstractArticlePDF–2.8M
11.
The dynamics of replication licensing in live Caenorhabditis elegans embryos
Remi Sonneville, Matthieu Querenet, Ashley Craig, Anton Gartner, J. Julian Blow
J Cell Biol. 2012 Jan 23; 196(2): 233–246. doi: 10.1083/jcb.201110080
PMCID:
PMC3265957
AbstractArticlePDF–2.9M
12.
In vivo and transcriptome-wide identification of RNA binding protein target sites
AC Jungkamp, M Stoeckius, D Mecenas, D Grün, G Mastrobuoni, S Kempa, N Rajewsky
Mol Cell. Author manuscript; available in PMC 2012 Dec 9.
Published in final edited form as: Mol Cell. 2011 Dec 9; 44(5): 828–840. doi: 10.1016/j.molcel.2011.11.009
PMCID:
PMC3253457
AbstractArticlePDF–2.3M
13.
OrthoList: A Compendium of C. elegans Genes with Human Orthologs
Daniel D. Shaye, Iva Greenwald
PLoS One. 2011; 6(5): e20085. Published online 2011 May 25. doi: 10.1371/journal.pone.0020085
Correction in:
PLoS One. 2014; 9(1): 10.1371/annotation/f5ffb738-a176-4a43-b0e0-249cdea45fe0.
PMCID:
PMC3102077
AbstractArticlePDF–530K
14.
Predicting PDZ domain–peptide interactions from primary sequences
Jiunn R Chen, Bryan H Chang, John E Allen, Michael A Stiffler, Gavin MacBeath
Nat Biotechnol. Author manuscript; available in PMC 2009 Mar 13.
Published in final edited form as: Nat Biotechnol. 2008 Sep; 26(9): 1041–1045. doi: 10.1038/nbt.1489
Correction in:
volume 26 on page 1193
PMCID:
PMC2655215
AbstractArticlePDF–1.6M
15.
A protein domain-based interactome network for C. elegans early embryogenesis
Mike Boxem, Zoltan Maliga, Niels Klitgord, Na Li, Irma Lemmens, Miyeko Mana, Lorenzo de Lichtervelde, Joram D. Mul, Diederik van de Peut, Maxime Devos, Nicolas Simonis, Muhammed A. Yildirim, Murat Cokol, Huey-Ling Kao, Anne-Sophie de Smet, Haidong Wang, Anne-Lore Schlaitz, Tong Hao, Stuart Milstein, Changyu Fan, Mike Tipsword, Kevin Drew, Matilde Galli, Kahn Rhrissorrakrai, David Drechsel, Daphne Koller, Frederick P. Roth, Lilia M. Iakoucheva, A. Keith Dunker, Richard Bonneau, Kristin C. Gunsalus, David E. Hill, Fabio Piano, Jan Tavernier, Sander van den Heuvel, Anthony A. Hyman, Marc Vidal
Cell. Author manuscript; available in PMC 2009 Aug 8.
Published in final edited form as: Cell. 2008 Aug 8; 134(3): 534–545. doi: 10.1016/j.cell.2008.07.009
Correction in:
volume 151 on page 1633
PMCID:
PMC2596478
AbstractArticlePDF–4.0M
16.
A Map of the Interactome Network of the Metazoan C. elegans
Siming Li, Christopher M. Armstrong, Nicolas Bertin, Hui Ge, Stuart Milstein, Mike Boxem, Pierre-Olivier Vidalain, Jing-Dong J. Han, Alban Chesneau, Tong Hao, Debra S. Goldberg, Ning Li, Monica Martinez, Jean-François Rual, Philippe Lamesch, Lai Xu, Muneesh Tewari, Sharyl L. Wong, Lan V. Zhang, Gabriel F. Berriz, Laurent Jacotot, Philippe Vaglio, Jérôme Reboul, Tomoko Hirozane-Kishikawa, Qianru Li, Harrison W. Gabel, Ahmed Elewa, Bridget Baumgartner, Debra J. Rose, Haiyuan Yu, Stephanie Bosak, Reynaldo Sequerra, Andrew Fraser, Susan E. Mango, William M. Saxton, Susan Strome, Sander van den Heuvel, Fabio Piano, Jean Vandenhaute, Claude Sardet, Mark Gerstein, Lynn Doucette-Stamm, Kristin C. Gunsalus, J. Wade Harper, Michael E. Cusick, Frederick P. Roth, David E. Hill, Marc Vidal
Science. Author manuscript; available in PMC 2006 Dec 14.
Published in final edited form as: Science. 2004 Jan 23; 303(5657): 540–543. Published online 2004 Jan 2. doi: 10.1126/science.1091403
PMCID:
PMC1698949
AbstractArticlePDF–1.4M
17.
Analysis of long-lived C. elegans daf-2 mutants using serial analysis of gene expression
Julius Halaschek-Wiener, Jaswinder S. Khattra, Sheldon McKay, Anatoli Pouzyrev, Jeff M. Stott, George S. Yang, Robert A. Holt, Steven J.M. Jones, Marco A. Marra, Angela R. Brooks-Wilson, Donald L. Riddle
Genome Res. 2005 May; 15(5): 603–615. doi: 10.1101/gr.3274805
PMCID:
PMC1088289
AbstractArticlePDF–632K

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