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Select item 71864571.

Posttranscriptional Regulation of tnaA by Protein-RNA Interaction Mediated by Ribosomal Protein L4 in Escherichia coli

Dharam Singh, Oleg N. Murashko, Sue Lin-Chao

J Bacteriol. 2020 May; 202(10): e00799-19. Prepublished online 2020 Mar 2. Published online 2020 Apr 27. doi: 10.1128/JB.00799-19

PMCID:: PMC7186457

Abstract Article PDF–3.9M

Select item 59067382.

Microbiota-Derived Indole Metabolites Promote Human and Murine Intestinal Homeostasis through Regulation of Interleukin-10 Receptor

Erica E. Alexeev, Jordi M. Lanis, Daniel J. Kao, Eric L. Campbell, Caleb J. Kelly, Kayla D. Battista, Mark E. Gerich, Brittany R. Jenkins, Seth T. Walk, Douglas J. Kominsky, Sean P. Colgan

Am J Pathol. 2018 May; 188(5): 1183–1194. doi: 10.1016/j.ajpath.2018.01.011

PMCID:: PMC5906738

Abstract Article

Select item 43563033.

Structures of Escherichia coli tryptophanase in holo and ‘semi-holo’ forms

Anna Kogan, Leah Raznov, Garik Y. Gdalevsky, Rivka Cohen-Luria, Orna Almog, Abraham H. Parola, Yehuda Goldgur

Acta Crystallogr F Struct Biol Commun. 2015 Mar 1; 71(Pt 3): 286–290. Published online 2015 Feb 19. doi: 10.1107/S2053230X15000850

PMCID:: PMC4356303

Abstract Article PDF–1.2M

Select item 43232324.

A new suite of tnaA mutants suggests that Escherichia coli tryptophanase is regulated by intracellular sequestration and by occlusion of its active site

Gang Li, Kevin D Young

BMC Microbiol. 2015; 15(1): 14. Published online 2015 Feb 4. doi: 10.1186/s12866-015-0346-3

PMCID:: PMC4323232

Abstract Article PDF–1.9M

Select item 41238555.

The binary protein-protein interaction landscape of Escherichia coli

Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz

Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.

Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831

PMCID:: PMC4123855

Abstract Article PDF–1.1M

Select item 32853556.

YajL, Prokaryotic Homolog of Parkinsonism-associated Protein DJ-1, Functions as a Covalent Chaperone for Thiol Proteome

Hai-Tuong Le, Valérie Gautier, Fatoum Kthiri, Abderrahim Malki, Nadia Messaoudi, Mouadh Mihoub, Ahmed Landoulsi, Young Jun An, Sun-Shin Cha, Gilbert Richarme

J Biol Chem. 2012 Feb 17; 287(8): 5861–5870. Published online 2011 Dec 7. doi: 10.1074/jbc.M111.299198

PMCID:: PMC3285355

Abstract Article PDF–1.2M

Select item 32058587.

Cross-linking Measurements of In Vivo Protein Complex Topologies

Chunxiang Zheng, Li Yang, Michael R. Hoopmann, Jimmy K. Eng, Xiaoting Tang, Chad R. Weisbrod, James E. Bruce

Mol Cell Proteomics. 2011 Oct; 10(10): M110.006841. Published online 2011 Jun 22. doi: 10.1074/mcp.M110.006841

PMCID:: PMC3205858

Abstract Article PDF–2.4M

Select item 27705448.

Conformational changes and loose packing promote E. coli Tryptophanase cold lability

Anna Kogan, Garik Y Gdalevsky, Rivka Cohen-Luria, Yehuda Goldgur, Robert S Phillips, Abraham H Parola, Orna Almog

BMC Struct Biol. 2009; 9: 65. Published online 2009 Oct 8. doi: 10.1186/1472-6807-9-65

PMCID:: PMC2770544

Abstract Article PDF–2.7M

Select item 27256169.

Production of 3-Nitrosoindole Derivatives by Escherichia coli during Anaerobic Growth

Young-Man Kwon, Bernard Weiss

J Bacteriol. 2009 Sep; 191(17): 5369–5376. Published online 2009 Jun 26. doi: 10.1128/JB.00586-09

PMCID:: PMC2725616

Abstract Article PDF–391K

Select item 259749110.

Over-expression of phage HK022 Nun protein is toxic for Escherichia coli

Augusto Uc-Mass, Arkady Khodursky, Lewis Brown, Max E. Gottesman

J Mol Biol. Author manuscript; available in PMC 2009 Jul 25.

Published in final edited form as: J Mol Biol. 2008 Jul 25; 380(5): 812–819. Published online 2008 May 17. doi: 10.1016/j.jmb.2008.05.030

PMCID:: PMC2597491

Abstract Article PDF–655K

Select item 244701211.

Conserved Residues Asp16 and Pro24 of TnaC-tRNA^Pro Participate in Tryptophan Induction of tna Operon Expression

Luis R. Cruz-Vera, Charles Yanofsky

J Bacteriol. 2008 Jul; 190(14): 4791–4797. Published online 2008 Apr 18. doi: 10.1128/JB.00290-08

PMCID:: PMC2447012

Abstract Article PDF–602K

Select item 192488712.

RNA-based regulation of genes of tryptophan synthesis and degradation, in bacteria

Charles Yanofsky

RNA. 2007 Aug; 13(8): 1141–1154. doi: 10.1261/rna.620507

PMCID:: PMC1924887

Abstract Article PDF–1.5M

Select item 168148113.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Abstract Article PDF–141K

Select item 154007914.

Growth Phase-Dependent Expression of Drug Exporters in Escherichia coli and Its Contribution to Drug Tolerance

Asuka Kobayashi, Hidetada Hirakawa, Takahiro Hirata, Kunihiko Nishino, Akihito Yamaguchi

J Bacteriol. 2006 Aug; 188(16): 5693–5703. doi: 10.1128/JB.00217-06

PMCID:: PMC1540079

Abstract Article PDF–636K

Select item 148937715.

Effect of Drug Transporter Genes on Cysteine Export and Overproduction in Escherichia coli

Satoshi Yamada, Naoki Awano, Kyoko Inubushi, Eri Maeda, Shigeru Nakamori, Kunihiko Nishino, Akihito Yamaguchi, Hiroshi Takagi

Appl Environ Microbiol. 2006 Jul; 72(7): 4735–4742. doi: 10.1128/AEM.02507-05

PMCID:: PMC1489377

Abstract Article PDF–229K

Select item 145705216.

Large-scale identification of protein–protein interaction of Escherichia coli K-12

Mohammad Arifuzzaman, Maki Maeda, Aya Itoh, Kensaku Nishikata, Chiharu Takita, Rintaro Saito, Takeshi Ara, Kenji Nakahigashi, Hsuan-Cheng Huang, Aki Hirai, Kohei Tsuzuki, Seira Nakamura, Mohammad Altaf-Ul-Amin, Taku Oshima, Tomoya Baba, Natsuko Yamamoto, Tomoyo Kawamura, Tomoko Ioka-Nakamichi, Masanari Kitagawa, Masaru Tomita, Shigehiko Kanaya, Chieko Wada, Hirotada Mori

Genome Res. 2006 May; 16(5): 686–691. doi: 10.1101/gr.4527806

PMCID:: PMC1457052

Abstract Article PDF–536K

Select item 132520017.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405