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Select item 54545331.

Optimized fragmentation schemes and data analysis strategies for proteome-wide cross-link identification

Fan Liu, Philip Lössl, Richard Scheltema, Rosa Viner, Albert J. R. Heck

Nat Commun. 2017; 8: 15473. Published online 2017 May 19. doi: 10.1038/ncomms15473

PMCID:: PMC5454533

Article PDF–1.5M

Select item 41238552.

The binary protein-protein interaction landscape of Escherichia coli

Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz

Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.

Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831

PMCID:: PMC4123855

Article PDF–1.1M

Select item 30470723.

Idiosyncrasy and identity in the prokaryotic phe-system: Crystal structure of E. coli phenylalanyl-tRNA synthetase complexed with phenylalanine and AMP

Inbal Mermershtain, Igal Finarov, Liron Klipcan, Naama Kessler, Haim Rozenberg, Mark G Safro

Protein Sci. 2011 Jan; 20(1): 160–167. Published online 2010 Nov 16. doi: 10.1002/pro.549

PMCID:: PMC3047072

Article PDF–362K

Select item 22921774.

Protein abundance profiling of the Escherichia coli cytosol

Yasushi Ishihama, Thorsten Schmidt, Juri Rappsilber, Matthias Mann, F Ulrich Hartl, Michael J Kerner, Dmitrij Frishman

BMC Genomics. 2008; 9: 102. Published online 2008 Feb 27. doi: 10.1186/1471-2164-9-102

PMCID:: PMC2292177

Article PDF–1.0M

Select item 16814825.

Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection

Tomoya Baba, Takeshi Ara, Miki Hasegawa, Yuki Takai, Yoshiko Okumura, Miki Baba, Kirill A Datsenko, Masaru Tomita, Barry L Wanner, Hirotada Mori

Mol Syst Biol. 2006; 2: 2006.0008. Published online 2006 Feb 21. doi: 10.1038/msb4100050

PMCID:: PMC1681482

Article PDF–400K

Select item 16814816.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Article PDF–141K

Select item 14570527.

Large-scale identification of protein–protein interaction of Escherichia coli K-12

Mohammad Arifuzzaman, Maki Maeda, Aya Itoh, Kensaku Nishikata, Chiharu Takita, Rintaro Saito, Takeshi Ara, Kenji Nakahigashi, Hsuan-Cheng Huang, Aki Hirai, Kohei Tsuzuki, Seira Nakamura, Mohammad Altaf-Ul-Amin, Taku Oshima, Tomoya Baba, Natsuko Yamamoto, Tomoyo Kawamura, Tomoko Ioka-Nakamichi, Masanari Kitagawa, Masaru Tomita, Shigehiko Kanaya, Chieko Wada, Hirotada Mori

Genome Res. 2006 May; 16(5): 686–691. doi: 10.1101/gr.4527806

PMCID:: PMC1457052

Article PDF–536K

Select item 13252008.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405

PMCID:: PMC1325200

Article PDF–204K

Select item 5542149.

Functional mutants of phenylalanine transfer RNA from Escherichia coli.

J Vacher, M Springer, R H Buckingham

EMBO J. 1985 Feb; 4(2): 509–513. doi: 10.1002/j.1460-2075.1985.tb03657.x

PMCID:: PMC554214

Article PDF–892K

Select item 53305710.

Post-transfer editing in vitro and in vivo by the β subunit of phenylalanyl-tRNA synthetase

Hervé Roy, Jiqiang Ling, Michael Irnov, Michael Ibba

EMBO J. 2004 Nov 24; 23(23): 4639–4648. Published online 2004 Nov 4. doi: 10.1038/sj.emboj.7600474

PMCID:: PMC533057

Article PDF–383K

Select item 42683111.

Phenylalanyl-tRNA Synthetase and Isoleucyl-tRNA^Phe: A Possible Verification Mechanism for Aminoacyl-tRNA

Michael Yarus

Proc Natl Acad Sci U S A. 1972 Jul; 69(7): 1915–1919. doi: 10.1073/pnas.69.7.1915

PMCID:: PMC426831

Article PDF–1002K

Select item 41355112.

Selection for active E. coli tRNA(Phe) variants from a randomized library using two proteins.

E T Peterson, J Blank, M Sprinzl, O C Uhlenbeck

EMBO J. 1993 Jul; 12(7): 2959–2967. doi: 10.1002/j.1460-2075.1993.tb05958.x

PMCID:: PMC413551

Article PDF–1.7M

Select item 32837013.

Sequence, structural and evolutionary relationships between class 2 aminoacyl-tRNA synthetases.

S Cusack, M Härtlein, R Leberman

Nucleic Acids Res. 1991 Jul 11; 19(13): 3489–3498. doi: 10.1093/nar/19.13.3489

PMCID:: PMC328370

Article PDF–2.3M

Select item 32152114.

New Class of Bacterial Phenylalanyl-tRNA Synthetase Inhibitors with High Potency and Broad-Spectrum Activity

Dieter Beyer, Hein-Peter Kroll, Rainer Endermann, Guido Schiffer, Stephan Siegel, Marcus Bauser, Jens Pohlmann, Michael Brands, Karl Ziegelbauer, Dieter Haebich, Christine Eymann, Heike Brötz-Oesterhelt

Antimicrob Agents Chemother. 2004 Feb; 48(2): 525–532. doi: 10.1128/AAC.48.2.525-532.2004