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Items: 1 to 20 of 66

1.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
2.
ISW1a modulates cohesin distribution in centromeric and pericentromeric regions
Ireneusz Litwin, Małgorzata Nowicka, Katarzyna Markowska, Ewa Maciaszczyk-Dziubińska, Paulina Tomaszewska, Robert Wysocki, Karol Kramarz
Nucleic Acids Res. 2023 Sep 22; 51(17): 9101–9121. Published online 2023 Jul 24. doi: 10.1093/nar/gkad612
PMCID:
PMC10516642
AbstractArticlePDF–2.8M
3.
Fob1-dependent condensin recruitment and loop extrusion on yeast chromosome III
Manikarna Dinda, Ryan D. Fine, Shekhar Saha, Zhenjia Wang, Chongzhi Zang, Mingguang Li, Jeffrey S. Smith
PLoS Genet. 2023 Apr; 19(4): e1010705. Published online 2023 Apr 14. doi: 10.1371/journal.pgen.1010705
PMCID:
PMC10132618
AbstractArticlePDF–3.5M
4.
A balancing act: interactions within NuA4/TIP60 regulate picNuA4 function in Saccharomyces cerevisiae and humans
Phoebe Y T Lu, Alyssa C Kirlin, Maria J Aristizabal, Hilary T Brewis, Nancy Lévesque, Dheva T Setiaputra, Nikita Avvakumov, Joris J Benschop, Marian Groot Koerkamp, Frank C P Holstege, Nevan J Krogan, Calvin K Yip, Jacques Côté, Michael S Kobor
Genetics. 2022 Nov; 222(3): iyac136. Published online 2022 Sep 6. doi: 10.1093/genetics/iyac136
PMCID:
PMC9630986
AbstractArticlePDF–2.2M
5.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
6.
The fork protection complex recruits FACT to reorganize nucleosomes during replication
Barbara Safaric, Erika Chacin, Matthias J Scherr, Lional Rajappa, Christian Gebhardt, Christoph F Kurat, Thorben Cordes, Karl E Duderstadt
Nucleic Acids Res. 2022 Feb 22; 50(3): 1317–1334. Published online 2022 Jan 21. doi: 10.1093/nar/gkac005
PMCID:
PMC8860610
AbstractArticlePDF–5.7M
7.
Investigation of RNA metabolism through large-scale genetic interaction profiling in yeast
Laurence Decourty, Christophe Malabat, Emmanuel Frachon, Alain Jacquier, Cosmin Saveanu
Nucleic Acids Res. 2021 Sep 7; 49(15): 8535–8555. Published online 2021 Aug 6. doi: 10.1093/nar/gkab680
PMCID:
PMC8421204
AbstractArticlePDF–2.9M
8.
Nucleolar release of rDNA repeats for repair involves SUMO-mediated untethering by the Cdc48/p97 segregase
Matías Capella, Imke K. Mandemaker, Lucía Martín Caballero, Fabian den Brave, Boris Pfander, Andreas G. Ladurner, Stefan Jentsch, Sigurd Braun
Nat Commun. 2021; 12: 4918. Published online 2021 Aug 13. doi: 10.1038/s41467-021-25205-2
PMCID:
PMC8363623
AbstractArticlePDF–4.9M
9.
Smc5/6 in the rDNA modulates lifespan independently of Fob1​
Sarah Moradi‐Fard, Aditya Mojumdar, Megan Chan, Troy A.A. Harkness, Jennifer A. Cobb
Aging Cell. 2021 Jun; 20(6): e13373. Published online 2021 May 12. doi: 10.1111/acel.13373
PMCID:
PMC8208791
AbstractArticlePDF–2.3M
10.
Comprehensive Synthetic Genetic Array Analysis of Alleles That Interact with Mutation of the Saccharomyces cerevisiae RecQ Helicases Hrq1 and Sgs1
Elsbeth Sanders, Phoebe A. Nguyen, Cody M. Rogers, Matthew L. Bochman
G3 (Bethesda) 2020 Dec; 10(12): 4359–4368. Published online 2020 Oct 28. doi: 10.1534/g3.120.401709
PMCID:
PMC7718751
AbstractArticlePDF–1.2M
11.
A Genome-Wide Screen for Genes Affecting Spontaneous Direct-Repeat Recombination in Saccharomyces cerevisiae
Daniele Novarina, Ridhdhi Desai, Jessica A. Vaisica, Jiongwen Ou, Mohammed Bellaoui, Grant W. Brown, Michael Chang
G3 (Bethesda) 2020 Jun; 10(6): 1853–1867. Published online 2020 Apr 3. doi: 10.1534/g3.120.401137
Correction in:
G3 (Bethesda). 2022 Sep; 12(9): jkac181.
PMCID:
PMC7263696
AbstractArticlePDF–2.2M
12.
Siz2 Prevents Ribosomal DNA Recombination by Modulating Levels of Tof2 in Saccharomyces cerevisiae
Neethu Maria Abraham, Kathirvel Ramalingam, Saketh Murthy, Krishnaveni Mishra
mSphere. 2019 Nov-Dec; 4(6): e00713-19. Published online 2019 Nov 27. doi: 10.1128/mSphere.00713-19
PMCID:
PMC6881720
AbstractArticlePDF–1.2M
13.
The molecular basis of monopolin recruitment to the kinetochore
Rebecca Plowman, Namit Singh, Eelco C. Tromer, Angel Payan, Eris Duro, Christos Spanos, Juri Rappsilber, Berend Snel, Geert J. P.L. Kops, Kevin D. Corbett, Adele L. Marston
Chromosoma. 2019; 128(3): 331–354. Published online 2019 Apr 30. doi: 10.1007/s00412-019-00700-0
PMCID:
PMC6823300
AbstractArticlePDF–3.9M
14.
An ESCRT-LEM protein surveillance system is poised to directly monitor the nuclear envelope and nuclear transport system
David J Thaller, Matteo Allegretti, Sapan Borah, Paolo Ronchi, Martin Beck, C Patrick Lusk
eLife. 2019; 8: e45284. Published online 2019 Apr 3. doi: 10.7554/eLife.45284
PMCID:
PMC6461442
AbstractArticlePDF–17M
15.
Effect of Sec61 interaction with Mpd1 on endoplasmic reticulum-associated degradation
Fabio Pereira, Mandy Rettel, Frank Stein, Mikhail M. Savitski, Ian Collinson, Karin Römisch
PLoS One. 2019; 14(1): e0211180. Published online 2019 Jan 25. doi: 10.1371/journal.pone.0211180
PMCID:
PMC6347170
AbstractArticlePDF–16M
16.
The budding‐yeast RWD protein Csm1 scaffolds diverse protein complexes through a conserved structural mechanism
Namit Singh, Kevin D. Corbett
Protein Sci. 2018 Dec; 27(12): 2094–2100. Published online 2018 Nov 5. doi: 10.1002/pro.3515
PMCID:
PMC6237700
AbstractArticlePDF–571K
17.
Systematic Analysis of Complex Genetic Interactions
Elena Kuzmin, Benjamin VanderSluis, Wen Wang, Guihong Tan, Raamesh Deshpande, Yiqun Chen, Matej Usaj, Attila Balint, Mojca Mattiazzi Usaj, Jolanda van Leeuwen, Elizabeth N. Koch, Carles Pons, Andrius J. Dagilis, Michael Pryszlak, Jason Zi Yang Wang, Julia Hanchard, Margot Riggi, Kaicong Xu, Hamed Heydari, Bryan-Joseph San Luis, Ermira Shuteriqi, Hongwei Zhu, Nydia Van Dyk, Sara Sharifpoor, Michael Costanzo, Robbie Loewith, Amy Caudy, Daniel Bolnick, Grant W. Brown, Brenda J. Andrews, Charles Boone, Chad L. Myers
Science. Author manuscript; available in PMC 2018 Nov 4.
Published in final edited form as: Science. 2018 Apr 20; 360(6386): eaao1729. doi: 10.1126/science.aao1729
PMCID:
PMC6215713
AbstractArticlePDF–1.9M
18.
CLIP and cohibin separate rDNA from nucleolar proteins destined for degradation by nucleophagy
Md. Golam Mostofa, Muhammad Arifur Rahman, Naoki Koike, Akter MST Yeasmin, Nafisa Islam, Talukdar Muhammad Waliullah, Shun Hosoyamada, Mitsugu Shimobayashi, Takehiko Kobayashi, Michael N. Hall, Takashi Ushimaru
J Cell Biol. 2018 Aug 6; 217(8): 2675–2690. doi: 10.1083/jcb.201706164
PMCID:
PMC6080932
AbstractArticlePDF–3.1M
19.
Binding to small ubiquitin-like modifier and the nucleolar protein Csm1 regulates substrate specificity of the Ulp2 protease
Claudio Ponte de Albuquerque, Raymond T. Suhandynata, Christopher R. Carlson, Wei-Tsung Yuan, Huilin Zhou
J Biol Chem. 2018 Aug 3; 293(31): 12105–12119. Published online 2018 Jun 14. doi: 10.1074/jbc.RA118.003022
PMCID:
PMC6078457
AbstractArticlePDF–2.4M
20.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M

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