PMC Links for GEO Profiles (Select 57955748) - PMC

Select item 109600371.

Rab4A-directed endosome traffic shapes pro-inflammatory mitochondrial metabolism in T cells via mitophagy, CD98 expression, and kynurenine-sensitive mTOR activation

Nick Huang, Thomas Winans, Brandon Wyman, Zachary Oaks, Tamas Faludi, Gourav Choudhary, Zhi-Wei Lai, Joshua Lewis, Miguel Beckford, Manuel Duarte, Daniel Krakko, Akshay Patel, Joy Park, Tiffany Caza, Mahsa Sadeghzadeh, Laurence Morel, Mark Haas, Frank Middleton, Katalin Banki, Andras Perl

Nat Commun. 2024; 15: 2598. Published online 2024 Mar 22. doi: 10.1038/s41467-024-46441-2

PMCID:: PMC10960037

Abstract Article PDF–5.9M

Select item 109176602.

Genetic determinants of micronucleus formation in vivo

D. J. Adams, B. Barlas, R. E. McIntyre, I. Salguero, L. van der Weyden, A. Barros, J. R. Vicente, N. Karimpour, A. Haider, M. Ranzani, G. Turner, N. A. Thompson, V. Harle, R. Olvera-León, C. D. Robles-Espinoza, A. O. Speak, N. Geisler, W. J. Weninger, S. H. Geyer, J. Hewinson, N. A. Karp, The Sanger Mouse Genetics Project, B. Fu, F. Yang, Z. Kozik, J. Choudhary, L. Yu, M. S. van Ruiten, B. D. Rowland, C. J. Lelliott, M. del Castillo Velasco-Herrera, R. Verstraten, L. Bruckner, A. G. Henssen, M. A. Rooimans, J. de Lange, T. J. Mohun, M. J. Arends, K. A. Kentistou, P. A. Coelho, Y. Zhao, H. Zecchini, J. R. B. Perry, S. P. Jackson, G. Balmus

Nature. 2024; 627(8002): 130–136. Published online 2024 Feb 14. doi: 10.1038/s41586-023-07009-0

PMCID:: PMC10917660

Abstract Article PDF–4.8M

Select item 84812503.

Vacuolar-type proton ATPase is required for maintenance of apicobasal polarity of embryonic visceral endoderm

Ge-Hong Sun-Wada, Hiroyuki Tabata, Yoh Wada

Sci Rep. 2021; 11: 19355. Published online 2021 Sep 29. doi: 10.1038/s41598-021-98952-3

PMCID:: PMC8481250

Abstract Article PDF–3.5M

Select item 81713814.

Rab7-Mediated Endocytosis Establishes Patterning of Wnt Activity through Inactivation of Dkk Antagonism

Nobuyuki Kawamura, Katsuyoshi Takaoka, Hiroshi Hamada, Anna-Katerina Hadjantonakis, Ge-Hong Sun-Wada, Yoh Wada

Cell Rep. Author manuscript; available in PMC 2021 Jun 2.

Published in final edited form as: Cell Rep. 2020 Jun 9; 31(10): 107733. doi: 10.1016/j.celrep.2020.107733

PMCID:: PMC8171381

Abstract Article PDF–1.3M

Select item 51348935.

Variants of Rab GTPase-effector binding protein-2 cause variation in the collateral circulation and severity of stroke

Jennifer L. Lucitti, Robert Sealock, Brian K. Buckley, Hua Zhang, Lin Xiao, Andrew C. Dudley, James E. Faber

Stroke. Author manuscript; available in PMC 2017 Dec 1.

Published in final edited form as: Stroke. 2016 Dec; 47(12): 3022–3031. Published online 2016 Nov 3. doi: 10.1161/STROKEAHA.116.014160

PMCID:: PMC5134893

Abstract Article PDF–1.0M

Select item 44170486.

EARP, a multisubunit tethering complex involved in endocytic recycling

Christina Schindler, Yu Chen, Jing Pu, Xiaoli Guo, Juan S. Bonifacino

Nat Cell Biol. Author manuscript; available in PMC 2015 Nov 1.

Published in final edited form as: Nat Cell Biol. 2015 May; 17(5): 639–650. Published online 2015 Mar 23. doi: 10.1038/ncb3129

PMCID:: PMC4417048

Abstract Article PDF–2.9M

Select item 39649557.

The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data

Gautier Koscielny, Gagarine Yaikhom, Vivek Iyer, Terrence F. Meehan, Hugh Morgan, Julian Atienza-Herrero, Andrew Blake, Chao-Kung Chen, Richard Easty, Armida Di Fenza, Tanja Fiegel, Mark Grifiths, Alan Horne, Natasha A. Karp, Natalja Kurbatova, Jeremy C. Mason, Peter Matthews, Darren J. Oakley, Asfand Qazi, Jack Regnart, Ahmad Retha, Luis A. Santos, Duncan J. Sneddon, Jonathan Warren, Henrik Westerberg, Robert J. Wilson, David G. Melvin, Damian Smedley, Steve D. M. Brown, Paul Flicek, William C. Skarnes, Ann-Marie Mallon, Helen Parkinson

Nucleic Acids Res. 2014 Jan 1; 42(Database issue): D802–D809. Published online 2013 Nov 3. doi: 10.1093/nar/gkt977

PMCID:: PMC3964955

Abstract Article PDF–5.7M

Select item 34633068.

Ablation of Vacuole Protein Sorting 18 (Vps18) Gene Leads to Neurodegeneration and Impaired Neuronal Migration by Disrupting Multiple Vesicle Transport Pathways to Lysosomes

Chao Peng, Jian Ye, Shunfei Yan, Shanshan Kong, Ye Shen, Chenyu Li, Qinyu Li, Yufang Zheng, Kejing Deng, Tian Xu, Wufan Tao

J Biol Chem. 2012 Sep 21; 287(39): 32861–32873. Published online 2012 Aug 1. doi: 10.1074/jbc.M112.384305

PMCID:: PMC3463306

Abstract Article PDF–6.3M

Select item 31780599.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 309654610.

Behavioral and Other Phenotypes in a Cytoplasmic Dynein Light Intermediate Chain 1 Mutant Mouse

Gareth T. Banks, Matilda A. Haas, Samantha Line, Hazel L. Shepherd, Mona AlQatari, Sammy Stewart, Ida Rishal, Amelia Philpott, Bernadett Kalmar, Anna Kuta, Michael Groves, Nicholas Parkinson, Abraham Acevedo-Arozena, Sebastian Brandner, David Bannerman, Linda Greensmith, Majid Hafezparast, Martin Koltzenburg, Robert Deacon, Mike Fainzilber, Elizabeth M. C. Fisher

J Neurosci. 2011 Apr 6; 31(14): 5483–5494. doi: 10.1523/JNEUROSCI.5244-10.2011

PMCID:: PMC3096546

Abstract Article PDF–2.1M

Select item 302253411.

A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo

Graciana Diez-Roux, Sandro Banfi, Marc Sultan, Lars Geffers, Santosh Anand, David Rozado, Alon Magen, Elena Canidio, Massimiliano Pagani, Ivana Peluso, Nathalie Lin-Marq, Muriel Koch, Marchesa Bilio, Immacolata Cantiello, Roberta Verde, Cristian De Masi, Salvatore A. Bianchi, Juliette Cicchini, Elodie Perroud, Shprese Mehmeti, Emilie Dagand, Sabine Schrinner, Asja Nürnberger, Katja Schmidt, Katja Metz, Christina Zwingmann, Norbert Brieske, Cindy Springer, Ana Martinez Hernandez, Sarah Herzog, Frauke Grabbe, Cornelia Sieverding, Barbara Fischer, Kathrin Schrader, Maren Brockmeyer, Sarah Dettmer, Christin Helbig, Violaine Alunni, Marie-Annick Battaini, Carole Mura, Charlotte N. Henrichsen, Raquel Garcia-Lopez, Diego Echevarria, Eduardo Puelles, Elena Garcia-Calero, Stefan Kruse, Markus Uhr, Christine Kauck, Guangjie Feng, Nestor Milyaev, Chuang Kee Ong, Lalit Kumar, MeiSze Lam, Colin A. Semple, Attila Gyenesei, Stefan Mundlos, Uwe Radelof, Hans Lehrach, Paolo Sarmientos, Alexandre Reymond, Duncan R. Davidson, Pascal Dollé, Stylianos E. Antonarakis, Marie-Laure Yaspo, Salvador Martinez, Richard A. Baldock, Gregor Eichele, Andrea Ballabio

PLoS Biol. 2011 Jan; 9(1): e1000582. Published online 2011 Jan 18. doi: 10.1371/journal.pbio.1000582

PMCID:: PMC3022534

Abstract Article PDF–3.8M

Select item 297586312.

Akt2 deficiency promotes cardiac induction of Rab4a and myocardial β-adrenergic hypersensitivity

Sharon Etzion, Yoram Etzion, Brian DeBosch, Peter A. Crawford, Anthony J. Muslin

J Mol Cell Cardiol. Author manuscript; available in PMC 2011 Dec 1.

Published in final edited form as: J Mol Cell Cardiol. 2010 Dec; 49(6): 931–940. Published online 2010 Aug 20. doi: 10.1016/j.yjmcc.2010.08.011

PMCID:: PMC2975863

Abstract Article PDF–727K

Select item 273544213.

Enhancement of the Recycling and Activation of β-Adrenergic Receptor by Rab4 GTPase in Cardiac Myocytes

Catalin M. Filipeanu, Fuguo Zhou, May L. Lam, Kenneth E. Kerut, William C. Claycomb, Guangyu Wu

J Biol Chem. Author manuscript; available in PMC 2009 Aug 31.

Published in final edited form as: J Biol Chem. 2006 Apr 21; 281(16): 11097–11103. Published online 2006 Feb 16. doi: 10.1074/jbc.M511460200

PMCID:: PMC2735442

Abstract Article PDF–1.0M

Select item 269579314.

Activation of Protein Kinase C α Is Necessary for Sorting the PDGF β-Receptor to Rab4a-dependent Recycling

Carina Hellberg, Christian Schmees, Susann Karlsson, Aive Åhgren, Carl-Henrik Heldin

Mol Biol Cell. 2009 Jun 15; 20(12): 2856–2863. doi: 10.1091/mbc.E08-12-1228

PMCID:: PMC2695793

Abstract Article PDF–1.2M

Select item 141356815.

BGEM: An In Situ Hybridization Database of Gene Expression in the Embryonic and Adult Mouse Nervous System

Susan Magdaleno, Patricia Jensen, Craig L Brumwell, Anna Seal, Karen Lehman, Andrew Asbury, Tony Cheung, Tommie Cornelius, Diana M Batten, Christopher Eden, Shannon M Norland, Dennis S Rice, Nilesh Dosooye, Sundeep Shakya, Perdeep Mehta, Tom Curran

PLoS Biol. 2006 Apr; 4(4): e86. Published online 2006 Mar 28. doi: 10.1371/journal.pbio.0040086

PMCID:: PMC1413568

Article PDF–99K

Select item 31099216.

RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer

Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki

Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600

PMCID:: PMC310992

Abstract Article PDF–3.4M

Select item 31098017.

Normalization and Subtraction of Cap-Trapper-Selected cDNAs to Prepare Full-Length cDNA Libraries for Rapid Discovery of New Genes

Piero Carninci, Yuko Shibata, Norihito Hayatsu, Yuichi Sugahara, Kazuhiro Shibata, Masayoshi Itoh, Hideaki Konno, Yasushi Okazaki, Masami Muramatsu, Yoshihide Hayashizaki

Genome Res. 2000 Oct; 10(10): 1617–1630. doi: 10.1101/gr.145100

PMCID:: PMC310980

Abstract Article PDF–1.4M

Select item 16222118.

Insulin-Induced GLUT4 Translocation Involves Protein Kinase C-λ-Mediated Functional Coupling between Rab4 and the Motor Protein Kinesin

Takeshi Imamura, Jie Huang, Isao Usui, Hiroaki Satoh, Jennie Bever, Jerrold M. Olefsky

Mol Cell Biol. 2003 Jul; 23(14): 4892–4900. doi: 10.1128/MCB.23.14.4892-4900.2003

PMCID:: PMC162221

Abstract Article PDF–327K

Select item 13924119.

Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences

Mammalian Gene Collection (MGC) Program Team

Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899

PMCID:: PMC139241

Abstract Article PDF–118K

Select item 2930920.

A FYVE-finger-containing protein, Rabip4, is a Rab4 effector involved in early endosomal traffic

Mireille Cormont, Muriel Mari, Antoine Galmiche, Paul Hofman, Yannick Le Marchand-Brustel

Proc Natl Acad Sci U S A. 2001 Feb 13; 98(4): 1637–1642. Published online 2001 Jan 30. doi: 10.1073/pnas.031586998

PMCID:: PMC29309

Abstract Article PDF–1020K

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