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Select item 110870531.

Dynamic modes of Notch transcription hubs conferring memory and stochastic activation revealed by live imaging the co-activator Mastermind

F Javier DeHaro-Arbona, Charalambos Roussos, Sarah Baloul, Jonathan Townson, María J Gómez Lamarca, Sarah Bray

eLife. 2024; 12: RP92083. Published online 2024 May 10. doi: 10.7554/eLife.92083

PMCID:: PMC11087053

Abstract Article PDF–6.6M

Select item 101794612.

Genome-Wide Expression Analysis of Long Noncoding RNAs and Their Target Genes in Metafemale Drosophila

Xinyu Liu, Ran Yan, Haosheng Liu, Shuai Zhang, Ruixue Wang, Bowen Zhang, Lin Sun

Int J Mol Sci. 2023 May; 24(9): 8381. Published online 2023 May 6. doi: 10.3390/ijms24098381

PMCID:: PMC10179461

Abstract Article PDF–8.2M

Select item 99975703.

NDR kinase tricornered genetically interacts with Ccm3 and metabolic enzymes in Drosophila melanogaster tracheal development

Joshua Hudson, Sayantanee Paul, Alexey Veraksa, Amin Ghabrial, Kieran F Harvey, Carole Poon

G3 (Bethesda) 2023 Mar; 13(3): jkad013. Published online 2023 Jan 19. doi: 10.1093/g3journal/jkad013

PMCID:: PMC9997570

Abstract Article PDF–798K

Select item 99385904.

Proximity labeling reveals a new in vivo network of interactors for the histone demethylase KDM5

Matanel Yheskel, Simone Sidoli, Julie Secombe

Epigenetics Chromatin. 2023; 16: 8. Published online 2023 Feb 18. doi: 10.1186/s13072-023-00481-y

PMCID:: PMC9938590

Abstract Article PDF–4.8M

Select item 86644865.

Genome-wide phenotypic RNAi screen in the Drosophila wing: phenotypic description of functional classes

Ana López-Varea, Patricia Vega-Cuesta, Ana Ruiz-Gómez, Cristina M Ostalé, Cristina Molnar, Covadonga F Hevia, Mercedes Martín, Maria F Organista, Jesus de Celis, Joaquín Culí, Nuria Esteban, Jose F de Celis

G3 (Bethesda) 2021 Dec; 11(12): jkab349. Published online 2021 Oct 2. doi: 10.1093/g3journal/jkab349

PMCID:: PMC8664486

Abstract Article PDF–3.1M

Select item 85740426.

An explainable artificial intelligence approach for decoding the enhancer histone modifications code and identification of novel enhancers in Drosophila

Jareth C. Wolfe, Liudmila A. Mikheeva, Hani Hagras, Nicolae Radu Zabet

Genome Biol. 2021; 22: 308. Published online 2021 Nov 8. doi: 10.1186/s13059-021-02532-7

PMCID:: PMC8574042

Abstract Article PDF–2.4M

Select item 84630737.

Comparison of transcriptional initiation by RNA polymerase II across eukaryotic species

Natalia Petrenko, Kevin Struhl

eLife. 2021; 10: e67964. Published online 2021 Sep 13. doi: 10.7554/eLife.67964

PMCID:: PMC8463073

Abstract Article PDF–3.2M

Select item 79772878.

Differential Requirements for Mediator Complex Subunits in Drosophila melanogaster Host Defense Against Fungal and Bacterial Pathogens

Chuqin Huang, Rui Xu, Samuel Liégeois, Di Chen, Zi Li, Dominique Ferrandon

Front Immunol. 2020; 11: 478958. Published online 2021 Mar 5. doi: 10.3389/fimmu.2020.478958

PMCID:: PMC7977287

Abstract Article PDF–2.3M

Select item 75216419.

Mediator complex subunit Med19 binds directly GATA transcription factors and is required with Med1 for GATA-driven gene regulation in vivo

Clément Immarigeon, Sandra Bernat-Fabre, Emmanuelle Guillou, Alexis Verger, Elodie Prince, Mohamed A. Benmedjahed, Adeline Payet, Marie Couralet, Didier Monte, Vincent Villeret, Henri-Marc Bourbon, Muriel Boube

J Biol Chem. 2020 Sep 25; 295(39): 13617–13629. Published online 2020 Jul 31. doi: 10.1074/jbc.RA120.013728

PMCID:: PMC7521641

Abstract Article PDF–3.0M

Select item 728267610.

The Mediator CDK8-Cyclin C complex modulates Dpp signaling in Drosophila by stimulating Mad-dependent transcription

Xiao Li, Mengmeng Liu, Xingjie Ren, Nicolas Loncle, Qun Wang, Rajitha-Udakara-Sampath Hemba-Waduge, Stephen H. Yu, Muriel Boube, Henri-Marc G. Bourbon, Jian-Quan Ni, Jun-Yuan Ji

PLoS Genet. 2020 May; 16(5): e1008832. Published online 2020 May 28. doi: 10.1371/journal.pgen.1008832

PMCID:: PMC7282676

Abstract Article PDF–4.0M

Select item 696157811.

CRISPR-based modular assembly of a UAS-cDNA/ORF plasmid library for more than 5500 Drosophila genes conserved in humans

Ping Wei, Wen Xue, Yun Zhao, Guang Ning, Jiwu Wang

Genome Res. 2020 Jan; 30(1): 95–106. doi: 10.1101/gr.250811.119

PMCID:: PMC6961578

Abstract Article PDF–3.6M

Select item 644238012.

Cohesin occupancy and composition at enhancers and promoters are linked to DNA replication origin proximity in Drosophila

Michelle Pherson, Ziva Misulovin, Maria Gause, Dale Dorsett

Genome Res. 2019 Apr; 29(4): 602–612. doi: 10.1101/gr.243832.118

PMCID:: PMC6442380

Abstract Article PDF–10M

Select item 642514413.

Drosophila Mediator Subunit Med1 Is Required for GATA-Dependent Developmental Processes: Divergent Binding Interfaces for Conserved Coactivator Functions

Clément Immarigeon, Sandra Bernat-Fabre, Benoit Augé, Christian Faucher, Vanessa Gobert, Marc Haenlin, Lucas Waltzer, Adeline Payet, David L. Cribbs, Henri-Marc G. Bourbon, Muriel Boube

Mol Cell Biol. 2019 Apr 1; 39(7): e00477-18. Prepublished online 2019 Jan 22. Published online 2019 Mar 19. doi: 10.1128/MCB.00477-18

PMCID:: PMC6425144

Abstract Article PDF–3.5M

Select item 570780514.

Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species

Piero Sanfilippo, Jiayu Wen, Eric C. Lai

Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0

PMCID:: PMC5707805

Abstract Article PDF–3.2M

Select item 568900215.

Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster

Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira

RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117

PMCID:: PMC5689002

Abstract Article PDF–4.0M

Select item 540616716.

Mobile-phone radiation-induced perturbation of gene-expression profiling, redox equilibrium and sporadic-apoptosis control in the ovary of Drosophila melanogaster

Areti K. Manta, Deppie Papadopoulou, Alexander P. Polyzos, Adamantia F. Fragopoulou, Aikaterini S. Skouroliakou, Dimitris Thanos, Dimitrios J. Stravopodis, Lukas H. Margaritis

Fly (Austin) 2017; 11(2): 75–95. Published online 2016 Dec 14. doi: 10.1080/19336934.2016.1270487

PMCID:: PMC5406167

Abstract Article PDF–1.4M

Select item 478811617.

Hedgehog Signaling Strength Is Orchestrated by the mir-310 Cluster of MicroRNAs in Response to Diet

Ibrahim Ömer Çiçek, Samir Karaca, Marko Brankatschk, Suzanne Eaton, Henning Urlaub, Halyna R. Shcherbata

Genetics. 2016 Mar; 202(3): 1167–1183. Published online 2016 Jan 22. doi: 10.1534/genetics.115.185371

PMCID:: PMC4788116

Abstract Article PDF–4.7M

Select item 473800518.

Proteome-wide dataset supporting the study of ancient metazoan macromolecular complexes

Sadhna Phanse, Cuihong Wan, Blake Borgeson, Fan Tu, Kevin Drew, Greg Clark, Xuejian Xiong, Olga Kagan, Julian Kwan, Alexandr Bezginov, Kyle Chessman, Swati Pal, Graham Cromar, Ophelia Papoulas, Zuyao Ni, Daniel R. Boutz, Snejana Stoilova, Pierre C. Havugimana, Xinghua Guo, Ramy H. Malty, Mihail Sarov, Jack Greenblatt, Mohan Babu, W. Brent Derry, Elisabeth R. Tillier, John B. Wallingford, John Parkinson, Edward M. Marcotte, Andrew Emili

Data Brief. 2016 Mar; 6: 715–721. Published online 2015 Dec 12. doi: 10.1016/j.dib.2015.11.062

PMCID:: PMC4738005

Abstract Article PDF–205K

Select item 466666019.

Recruitment of Mediator Complex by Cell Type and Stage-Specific Factors Required for Tissue-Specific TAF Dependent Gene Activation in an Adult Stem Cell Lineage

Chenggang Lu, Margaret T. Fuller

PLoS Genet. 2015 Dec; 11(12): e1005701. Published online 2015 Dec 1. doi: 10.1371/journal.pgen.1005701

PMCID:: PMC4666660

Abstract Article PDF–2.3M

Select item 456802520.

Genes conserved in bilaterians but jointly lost with Myc during nematode evolution are enriched in cell proliferation and cell migration functions

Albert J. Erives

Dev Genes Evol. 2015; 225(5): 259–273. Published online 2015 Jul 15. doi: 10.1007/s00427-015-0508-1

PMCID:: PMC4568025

Abstract Article PDF–2.8M

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