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Select item 108724771.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 107001382.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 92098113.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 78524554.

The N-terminus of Sfi1 and yeast centrin Cdc31 provide the assembly site for a new spindle pole body

Diana Rüthnick, Jlenia Vitale, Annett Neuner, Elmar Schiebel

J Cell Biol. 2021 Mar 1; 220(3): e202004196. Published online 2021 Feb 1. doi: 10.1083/jcb.202004196

PMCID:: PMC7852455

Abstract Article PDF–7.1M

Select item 77187515.

Comprehensive Synthetic Genetic Array Analysis of Alleles That Interact with Mutation of the Saccharomyces cerevisiae RecQ Helicases Hrq1 and Sgs1

Elsbeth Sanders, Phoebe A. Nguyen, Cody M. Rogers, Matthew L. Bochman

G3 (Bethesda) 2020 Dec; 10(12): 4359–4368. Published online 2020 Oct 28. doi: 10.1534/g3.120.401709

PMCID:: PMC7718751

Abstract Article PDF–1.2M

Select item 76724336.

Altered rRNA processing disrupts nuclear RNA homeostasis via competition for the poly(A)-binding protein Nab2

Lisbeth-Carolina Aguilar, Biplab Paul, Taylor Reiter, Louis Gendron, Arvind Arul Nambi Rajan, Rachel Montpetit, Christian Trahan, Sebastian Pechmann, Marlene Oeffinger, Ben Montpetit

Nucleic Acids Res. 2020 Nov 18; 48(20): 11675–11694. Published online 2020 Nov 2. doi: 10.1093/nar/gkaa964

PMCID:: PMC7672433

Abstract Article PDF–6.0M

Select item 75944557.

SAGA–CORE subunit Spt7 is required for correct Ubp8 localization, chromatin association and deubiquitinase activity

Carme Nuño-Cabanes, Varinia García-Molinero, Manuel Martín-Expósito, María-Eugenia Gas, Paula Oliete-Calvo, Encar García-Oliver, María de la Iglesia-Vayá, Susana Rodríguez-Navarro

Epigenetics Chromatin. 2020; 13: 46. Published online 2020 Oct 28. doi: 10.1186/s13072-020-00367-3

PMCID:: PMC7594455

Abstract Article PDF–1.9M

Select item 71859748.

Spindle pole bodies function as signal amplifiers in the Mitotic Exit Network

Ian W. Campbell, Xiaoxue Zhou, Angelika Amon

Mol Biol Cell. 2020 Apr 15; 31(9): 906–916. doi: 10.1091/mbc.E19-10-0584

PMCID:: PMC7185974

Abstract Article PDF–9.2M

Select item 66488959.

Tsr4 and Nap1, two novel members of the ribosomal protein chaperOME

Ingrid Rössler, Julia Embacher, Benjamin Pillet, Guillaume Murat, Laura Liesinger, Jutta Hafner, Julia Judith Unterluggauer, Ruth Birner-Gruenberger, Dieter Kressler, Brigitte Pertschy

Nucleic Acids Res. 2019 Jul 26; 47(13): 6984–7002. Published online 2019 May 7. doi: 10.1093/nar/gkz317

PMCID:: PMC6648895

Abstract Article PDF–14M

Select item 621540910.

Novel phosphorylation states of the yeast spindle pole body

Kimberly K. Fong, Alex Zelter, Beth Graczyk, Jill M. Hoyt, Michael Riffle, Richard Johnson, Michael J. MacCoss, Trisha N. Davis

Biol Open. 2018 Oct 15; 7(10): bio033647. Published online 2018 Jun 14. doi: 10.1242/bio.033647

PMCID:: PMC6215409

Abstract Article PDF–1.1M

Select item 576535911.

Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4

Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese

G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415

PMCID:: PMC5765359

Abstract Article PDF–2.2M

Select item 564803212.

Architecture and dynamics of overlapped RNA regulatory networks

Christopher P. Lapointe, Melanie A. Preston, Daniel Wilinski, Harriet A.J. Saunders, Zachary T. Campbell, Marvin Wickens

RNA. 2017 Nov; 23(11): 1636–1647. doi: 10.1261/rna.062687.117

PMCID:: PMC5648032

Abstract Article PDF–6.6M

Select item 560192013.

P-body proteins regulate transcriptional rewiring to promote DNA replication stress resistance

Raphael Loll-Krippleber, Grant W. Brown

Nat Commun. 2017; 8: 558. Published online 2017 Sep 15. doi: 10.1038/s41467-017-00632-2

PMCID:: PMC5601920

Abstract Article PDF–3.8M

Select item 529478114.

The Vps13p–Cdc31p complex is directly required for TGN late endosome transport and TGN homotypic fusion

Mithu De, Austin N. Oleskie, Mariam Ayyash, Somnath Dutta, Liliya Mancour, Mohamed E. Abazeed, Eddy J. Brace, Georgios Skiniotis, Robert S. Fuller

J Cell Biol. 2017 Feb; 216(2): 425–439. doi: 10.1083/jcb.201606078

PMCID:: PMC5294781

Abstract Article PDF–2.3M

Select item 499185215.

The Sac3 TPR-like region in the Saccharomyces cerevisiae TREX-2 complex is more extensive but independent of the CID region

Shintaro Aibara, Xiao-Chen Bai, Murray Stewart

J Struct Biol. 2016 Sep; 195(3): 316–324. doi: 10.1016/j.jsb.2016.07.007

PMCID:: PMC4991852

Abstract Article

Select item 464423516.

The Nuclear Pore-Associated TREX-2 Complex Employs Mediator to Regulate Gene Expression

Maren Schneider, Doris Hellerschmied, Tobias Schubert, Stefan Amlacher, Vinesh Vinayachandran, Rohit Reja, B. Franklin Pugh, Tim Clausen, Alwin Köhler

Cell. 2015 Aug 27; 162(5): 1016–1028. doi: 10.1016/j.cell.2015.07.059

PMCID:: PMC4644235

Abstract Article

Select item 461603917.

Integrated multi-omics analyses reveal the pleiotropic nature of the control of gene expression by Puf3p

Christopher J. Kershaw, Joseph L. Costello, David Talavera, William Rowe, Lydia M. Castelli, Paul F. G. Sims, Christopher M. Grant, Mark P. Ashe, Simon J. Hubbard, Graham D. Pavitt

Sci Rep. 2015; 5: 15518. Published online 2015 Oct 23. doi: 10.1038/srep15518

PMCID:: PMC4616039

Abstract Article PDF–2.2M

Select item 460159718.

1.25 Å resolution structure of an RNA 20-mer that binds to the TREX2 complex

Eugene Valkov, Murray Stewart

Acta Crystallogr F Struct Biol Commun. 2015 Oct 1; 71(Pt 10): 1318–1321. Published online 2015 Sep 23. doi: 10.1107/S2053230X1501643X

PMCID:: PMC4601597

Abstract Article PDF–1.1M

Select item 456468919.

Structured illumination with particle averaging reveals novel roles for yeast centrosome components during duplication

Shannon Burns, Jennifer S Avena, Jay R Unruh, Zulin Yu, Sarah E Smith, Brian D Slaughter, Mark Winey, Sue L Jaspersen

eLife. 2015; 4: e08586. Published online 2015 Sep 15. doi: 10.7554/eLife.08586

PMCID:: PMC4564689

Abstract Article PDF–6.2M

Select item 447785620.

Kar1 binding to Sfi1 C-terminal regions anchors the SPB bridge to the nuclear envelope

Christian Seybold, Menattallah Elserafy, Diana Rüthnick, Musa Ozboyaci, Annett Neuner, Benjamin Flottmann, Mike Heilemann, Rebecca C. Wade, Elmar Schiebel

J Cell Biol. 2015 Jun 22; 209(6): 843–861. doi: 10.1083/jcb.201412050