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Items: 1 to 20 of 44

1.
Next-generation large-scale binary protein interaction network for Drosophila melanogaster
Hong-Wen Tang, Kerstin Spirohn, Yanhui Hu, Tong Hao, István A. Kovács, Yue Gao, Richard Binari, Donghui Yang-Zhou, Kenneth H. Wan, Joel S. Bader, Dawit Balcha, Wenting Bian, Benjamin W. Booth, Atina G. Coté, Steffi de Rouck, Alice Desbuleux, Kah Yong Goh, Dae-Kyum Kim, Jennifer J. Knapp, Wen Xing Lee, Irma Lemmens, Cathleen Li, Mian Li, Roujia Li, Hyobin Julianne Lim, Yifang Liu, Katja Luck, Dylan Markey, Carl Pollis, Sudharshan Rangarajan, Jonathan Rodiger, Sadie Schlabach, Yun Shen, Dayag Sheykhkarimli, Bridget TeeKing, Frederick P. Roth, Jan Tavernier, Michael A. Calderwood, David E. Hill, Susan E. Celniker, Marc Vidal, Norbert Perrimon, Stephanie E. Mohr
Nat Commun. 2023; 14: 2162. Published online 2023 Apr 15. doi: 10.1038/s41467-023-37876-0
PMCID:
PMC10105736
AbstractArticlePDF–3.2M
2.
MicroRNA mediated regulation of the onset of enteroblast differentiation in the Drosophila adult intestine
Sromana Mukherjee, Brian R. Calvi, Heather A. Hundley, Nicholas S. Sokol
Cell Rep. Author manuscript; available in PMC 2022 Nov 30.
Published in final edited form as: Cell Rep. 2022 Oct 18; 41(3): 111495. doi: 10.1016/j.celrep.2022.111495
PMCID:
PMC9711887
AbstractArticlePDF–2.4M
3.
Genome-wide phenotypic RNAi screen in the Drosophila wing: phenotypic description of functional classes
Ana López-Varea, Patricia Vega-Cuesta, Ana Ruiz-Gómez, Cristina M Ostalé, Cristina Molnar, Covadonga F Hevia, Mercedes Martín, Maria F Organista, Jesus de Celis, Joaquín Culí, Nuria Esteban, Jose F de Celis
G3 (Bethesda) 2021 Dec; 11(12): jkab349. Published online 2021 Oct 2. doi: 10.1093/g3journal/jkab349
PMCID:
PMC8664486
AbstractArticlePDF–3.1M
4.
The Functions and Mechanisms of Action of Insulators in the Genomes of Higher Eukaryotes
L. S. Melnikova, P. G. Georgiev, A. K. Golovnin
Acta Naturae. 2020 Oct-Dec; 12(4): 15–33. doi: 10.32607/actanaturae.11144
PMCID:
PMC7800606
AbstractArticlePDF–5.8M
5.
BEN-solo factors partition active chromatin to ensure proper gene activation in Drosophila
Malin Ueberschär, Huazhen Wang, Chun Zhang, Shu Kondo, Tsutomu Aoki, Paul Schedl, Eric C. Lai, Jiayu Wen, Qi Dai
Nat Commun. 2019; 10: 5700. Published online 2019 Dec 13. doi: 10.1038/s41467-019-13558-8
PMCID:
PMC6911014
AbstractArticlePDF–3.4M
6.
Distinct Elements Confer the Blocking and Bypass Functions of the Bithorax Fab-8 Boundary
Olga Kyrchanova, Daniel Wolle, Marat Sabirov, Amina Kurbidaeva, Tsutomu Aoki, Oksana Maksimenko, Maria Kyrchanova, Pavel Georgiev, Paul Schedl
Genetics. 2019 Nov; 213(3): 865–876. Published online 2019 Sep 24. doi: 10.1534/genetics.119.302694
PMCID:
PMC6827379
AbstractArticlePDF–2.2M
7.
Functional dissection of the developmentally restricted BEN domain chromatin boundary factor Insensitive
Anna Fedotova, Chaevia Clendinen, Artem Bonchuk, Vladic Mogila, Tsutomu Aoki, Pavel Georgiev, Paul Schedl
Epigenetics Chromatin. 2019; 12: 2. Published online 2019 Jan 3. doi: 10.1186/s13072-018-0249-2
PMCID:
PMC6317261
AbstractArticlePDF–2.6M
8.
The BEN Domain Protein Insensitive Binds to the Fab-7 Chromatin Boundary To Establish Proper Segmental Identity in Drosophila
Anna Fedotova, Tsutomu Aoki, Mikaël Rossier, Rakesh Kumar Mishra, Chaevia Clendinen, Olga Kyrchanova, Daniel Wolle, Artem Bonchuk, Robert K. Maeda, Annick Mutero, Fabienne Cleard, Vladic Mogila, François Karch, Pavel Georgiev, Paul Schedl
Genetics. 2018 Oct; 210(2): 573–585. Published online 2018 Jun 8. doi: 10.1534/genetics.118.301259
PMCID:
PMC6216583
AbstractArticlePDF–2.0M
9.
Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species
Piero Sanfilippo, Jiayu Wen, Eric C. Lai
Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0
PMCID:
PMC5707805
AbstractArticlePDF–3.2M
10.
Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster
Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira
RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117
PMCID:
PMC5689002
AbstractArticlePDF–4.0M
11.
Latitudinal clines in gene expression and cis-regulatory element variation in Drosophila melanogaster
Punita Juneja, Andrew Quinn, Francis M. Jiggins
BMC Genomics. 2016; 17: 981. Published online 2016 Nov 28. doi: 10.1186/s12864-016-3333-7
PMCID:
PMC5126864
AbstractArticlePDF–1.1M
12.
BEN domain protein Elba2 can functionally substitute for linker histone H1 in Drosophila in vivo
Na Xu, Xingwu Lu, Harsh Kavi, Alexander V. Emelyanov, Travis J. Bernardo, Elena Vershilova, Arthur I. Skoultchi, Dmitry V. Fyodorov
Sci Rep. 2016; 6: 34354. Published online 2016 Sep 30. doi: 10.1038/srep34354
PMCID:
PMC5043383
AbstractArticlePDF–1.1M
13.
Functional Requirements for Fab-7 Boundary Activity in the Bithorax Complex
Daniel Wolle, Fabienne Cleard, Tsutomu Aoki, Girish Deshpande, Paul Schedl, Francois Karch
Mol Cell Biol. 2015 Nov; 35(21): 3739–3752. Prepublished online 2015 Aug 24. Published online 2015 Sep 30. doi: 10.1128/MCB.00456-15
PMCID:
PMC4589599
AbstractArticlePDF–2.2M
14.
Functional role of dimerization and CP190 interacting domains of CTCF protein in Drosophila melanogaster
Artem Bonchuk, Oksana Maksimenko, Olga Kyrchanova, Tatyana Ivlieva, Vladic Mogila, Girish Deshpande, Daniel Wolle, Paul Schedl, Pavel Georgiev
BMC Biol. 2015; 13: 63. Published online 2015 Aug 7. doi: 10.1186/s12915-015-0168-7
PMCID:
PMC4528719
AbstractArticlePDF–3.7M
15.
Gene Model Annotations for Drosophila melanogaster: The Rule-Benders
Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937
PMCID:
PMC4528330
AbstractArticlePDF–2.2M
16.
Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data
Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929
PMCID:
PMC4528329
AbstractArticlePDF–4.9M
17.
The Release 6 reference sequence of the Drosophila melanogaster genome
Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker
Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114
PMCID:
PMC4352887
AbstractArticlePDF–1022K
18.
Comparative analysis of regulatory information and circuits across distant species
Alan P. Boyle, Carlos L. Araya, Cathleen Brdlik, Philip Cayting, Chao Cheng, Yong Cheng, Kathryn Gardner, LaDeana Hillier, Judith Janette, Lixia Jiang, Dionna Kasper, Trupti Kawli, Pouya Kheradpour, Anshul Kundaje, Jingyi Jessica Li, Lijia Ma, Wei Niu, E. Jay Rehm, Joel Rozowsky, Matthew Slattery, Rebecca Spokony, Robert Terrell, Dionne Vafeados, Daifeng Wang, Peter Weisdepp, Yi-Chieh Wu, Dan Xie, Koon-Kiu Yan, Elise A. Feingold, Peter J. Good, Michael J. Pazin, Haiyan Huang, Peter J. Bickel, Steven E. Brenner, Valerie Reinke, Robert H. Waterston, Mark Gerstein, Kevin P. White, Manolis Kellis, Michael Snyder
Nature. Author manuscript; available in PMC 2015 Feb 28.
Published in final edited form as: Nature. 2014 Aug 28; 512(7515): 453–456. doi: 10.1038/nature13668
PMCID:
PMC4336544
AbstractArticlePDF–2.9M
19.
Common and distinct DNA-binding and regulatory activities of the BEN-solo transcription factor family
Qi Dai, Aiming Ren, Jakub O. Westholm, Hong Duan, Dinshaw J. Patel, Eric C. Lai
Genes Dev. 2015 Jan 1; 29(1): 48–62. doi: 10.1101/gad.252122.114
PMCID:
PMC4281564
AbstractArticlePDF–1.8M
20.
Phylostratigraphic Bias Creates Spurious Patterns of Genome Evolution
Bryan A. Moyers, Jianzhi Zhang
Mol Biol Evol. 2015 Jan 1; 32(1): 258–267. Published online 2014 Oct 13. doi: 10.1093/molbev/msu286
Correction in:
Mol Biol Evol. 2016 Nov; 33(11): 3031.
PMCID:
PMC4271527
AbstractArticlePDF–618K

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