PMC Links for GEO Profiles (Select 61628660) - PMC

Select item 96840311.

Loss of circSRY reduces γH2AX level in germ cells and impairs mouse spermatogenesis

Yanze Song, Min Chen, Yingfan Zhang, Jiayi Li, Bowen Liu, Na Li, Min Chen, Miaomiao Qiao, Nan Wang, Yuanwei Cao, Shan Lu, Jian Chen, Wen Sun, Fei Gao, Haoyi Wang

Life Sci Alliance. 2023 Feb; 6(2): e202201617. Published online 2022 Nov 22. doi: 10.26508/lsa.202201617

PMCID:: PMC9684031

Abstract Article PDF–3.3M

Select item 83132392.

Cell-Type-Specific Gene Expression in Developing Mouse Neocortex: Intermediate Progenitors Implicated in Axon Development

Francesco Bedogni, Robert F. Hevner

Front Mol Neurosci. 2021; 14: 686034. Published online 2021 Jul 12. doi: 10.3389/fnmol.2021.686034

PMCID:: PMC8313239

Abstract Article PDF–1.6M

Select item 79387703.

BraInMap elucidates the macromolecular connectivity landscape of mammalian brain

Reza Pourhaghighi, Peter E. A. Ash, Sadhna Phanse, Florian Goebels, Lucas Z. M. Hu, Siwei Chen, Yingying Zhang, Shayne D. Wierbowski, Samantha Boudeau, Mohamed T. Moutaoufik, Ramy H. Malty, Edyta Malolepsza, Kalliopi Tsafou, Aparna Nathan, Graham Cromar, Hongbo Guo, Ali Al Abdullatif, Daniel J. Apicco, Lindsay A. Becker, Aaron D. Gitler, Stefan M. Pulst, Ahmed Youssef, Ryan Hekman, Pierre C. Havugimana, Carl A. White, Benjamin C. Blum, Antonia Ratti, Camron D. Bryant, John Parkinson, Kasper Lage, Mohan Babu, Haiyuan Yu, Gary D. Bader, Benjamin Wolozin, Andrew Emili

Cell Syst. Author manuscript; available in PMC 2021 Apr 22.

Published in final edited form as: Cell Syst. 2020 Apr 22; 10(4): 333–350.e14. doi: 10.1016/j.cels.2020.03.003

Correction in:: Cell Syst. 2020 Aug 26; 11(2): 208.

PMCID:: PMC7938770

Abstract Article PDF–2.0M

Select item 64084314.

Germline deletion of Cdyl causes teratozoospermia and progressive infertility in male mice

Xiaoyu Xia, Xiaowei Zhou, Yanmei Quan, Yanqin Hu, Fengying Xing, Zhengzheng Li, Bufang Xu, Chen Xu, Aijun Zhang

Cell Death Dis. 2019 Mar; 10(3): 229. Published online 2019 Mar 8. doi: 10.1038/s41419-019-1455-y

PMCID:: PMC6408431

Abstract Article PDF–5.1M

Select item 55002125.

Two genes substitute for the mouse Y chromosome for spermatogenesis and reproduction

Yasuhiro Yamauchi, Jonathan M. Riel, Victor A. Ruthig, Eglė A. Ortega, Michael J. Mitchell, Monika A. Ward

Science. Author manuscript; available in PMC 2017 Jul 6.

Published in final edited form as: Science. 2016 Jan 29; 351(6272): 514–516. doi: 10.1126/science.aad1795

PMCID:: PMC5500212

Abstract Article PDF–722K

Select item 49054766.

EIF2S3Y suppresses the pluripotency state and promotes the proliferation of mouse embryonic stem cells

Na Li, Hailong Mu, Liming Zheng, Bo Li, Chongyang Wu, Bowen Niu, Qiaoyan Shen, Xin He, Jinlian Hua

Oncotarget. 2016 Mar 8; 7(10): 11321–11331. Published online 2016 Feb 4. doi: 10.18632/oncotarget.7187

PMCID:: PMC4905476

Abstract Article PDF–2.6M

Select item 44252287.

TALEN-Mediated Gene Disruption on Y Chromosome Reveals Critical Role of EIF2S3Y in Mouse Spermatogenesis

Yohei Matsubara, Tomoko Kato, Kenichi Kashimada, Hiromitsu Tanaka, Zhou Zhi, Shizuko Ichinose, Shuki Mizutani, Tomohiro Morio, Tomoki Chiba, Yoshiaki Ito, Yumiko Saga, Shuji Takada, Hiroshi Asahara

Stem Cells Dev. 2015 May 15; 24(10): 1164–1170. Published online 2015 Jan 10. doi: 10.1089/scd.2014.0466

PMCID:: PMC4425228

Abstract Article PDF–623K

Select item 38806378.

Two Y genes can replace the entire Y chromosome for assisted reproduction in the mouse

Yasuhiro Yamauchi, Jonathan M. Riel, Zoia Stoytcheva, Monika A. Ward

Science. Author manuscript; available in PMC 2015 Jan 3.

Published in final edited form as: Science. 2014 Jan 3; 343(6166): 10.1126/science.1242544. Published online 2013 Nov 21. doi: 10.1126/science.1242544

PMCID:: PMC3880637

Abstract Article PDF–1.7M

Select item 37393659.

The role of Dby mRNA in early development of male mouse zygotes

Chen-Jiang Yao, Wang-Jie Xu, Xiu-Li Gong, Ying Zhou, Zhi-Qiang Yan, Zi-Jue Zhu, Zhao-Xia Wang, Qiao-Li Li, Xin-Bin Guo, Lian-Yun Wang, Duan Ma, Zhong-Dong Qiao

Asian J Androl. 2010 Jul; 12(4): 567–577. Published online 2010 Jun 14. doi: 10.1038/aja.2010.28

PMCID:: PMC3739365

Abstract Article PDF–737K

Select item 346404310.

Spermatid development in XO male mice with varying Y chromosome short-arm gene content: evidence for a Y gene controlling the initiation of sperm morphogenesis

Nadège Vernet, Shantha K Mahadevaiah, Peter J I Ellis, Dirk G de Rooij, Paul S Burgoyne

Reproduction. 2012 Oct; 144(4): 433–445. Prepublished online 2012 May 30. doi: 10.1530/REP-12-0158

Correction in:: Reproduction. 2020 Apr 1; 159(4): X1.

PMCID:: PMC3464043

Abstract Article PDF–506K

Select item 317805911.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 302253412.

A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo

Graciana Diez-Roux, Sandro Banfi, Marc Sultan, Lars Geffers, Santosh Anand, David Rozado, Alon Magen, Elena Canidio, Massimiliano Pagani, Ivana Peluso, Nathalie Lin-Marq, Muriel Koch, Marchesa Bilio, Immacolata Cantiello, Roberta Verde, Cristian De Masi, Salvatore A. Bianchi, Juliette Cicchini, Elodie Perroud, Shprese Mehmeti, Emilie Dagand, Sabine Schrinner, Asja Nürnberger, Katja Schmidt, Katja Metz, Christina Zwingmann, Norbert Brieske, Cindy Springer, Ana Martinez Hernandez, Sarah Herzog, Frauke Grabbe, Cornelia Sieverding, Barbara Fischer, Kathrin Schrader, Maren Brockmeyer, Sarah Dettmer, Christin Helbig, Violaine Alunni, Marie-Annick Battaini, Carole Mura, Charlotte N. Henrichsen, Raquel Garcia-Lopez, Diego Echevarria, Eduardo Puelles, Elena Garcia-Calero, Stefan Kruse, Markus Uhr, Christine Kauck, Guangjie Feng, Nestor Milyaev, Chuang Kee Ong, Lalit Kumar, MeiSze Lam, Colin A. Semple, Attila Gyenesei, Stefan Mundlos, Uwe Radelof, Hans Lehrach, Paolo Sarmientos, Alexandre Reymond, Duncan R. Davidson, Pascal Dollé, Stylianos E. Antonarakis, Marie-Laure Yaspo, Salvador Martinez, Richard A. Baldock, Gregor Eichele, Andrea Ballabio

PLoS Biol. 2011 Jan; 9(1): e1000582. Published online 2011 Jan 18. doi: 10.1371/journal.pbio.1000582

PMCID:: PMC3022534

Abstract Article PDF–3.8M

Select item 52892813.

The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)

Genome Res. 2004 Oct; 14(10b): 2121–2127. doi: 10.1101/gr.2596504

Correction in:: Genome Res. 2006 Jun; 16(6): 804.

PMCID:: PMC528928

Abstract Article PDF–140K

Select item 32710114.

Evolutionary Strata on the Mouse X Chromosome Correspond to Strata on the Human X Chromosome

Sara A. Sandstedt, Priscilla K. Tucker

Genome Res. 2004 Feb; 14(2): 267–272. doi: 10.1101/gr.1796204

PMCID:: PMC327101

Abstract Article PDF–142K

Select item 31099215.

RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer

Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki

Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600

PMCID:: PMC310992

Abstract Article PDF–3.4M

Select item 31098016.

Normalization and Subtraction of Cap-Trapper-Selected cDNAs to Prepare Full-Length cDNA Libraries for Rapid Discovery of New Genes

Piero Carninci, Yuko Shibata, Norihito Hayatsu, Yuichi Sugahara, Kazuhiro Shibata, Masayoshi Itoh, Hideaki Konno, Yasushi Okazaki, Masami Muramatsu, Yoshihide Hayashizaki

Genome Res. 2000 Oct; 10(10): 1617–1630. doi: 10.1101/gr.145100

PMCID:: PMC310980

Abstract Article PDF–1.4M

Select item 28355417.

Wnk1 kinase deficiency lowers blood pressure in mice: A gene-trap screen to identify potential targets for therapeutic intervention

Brian P. Zambrowicz, Alejandro Abuin, Ramiro Ramirez-Solis, Lizabeth J. Richter, James Piggott, Hector BeltrandelRio, Eric C. Buxton, Joel Edwards, Rick A. Finch, Carl J. Friddle, Anupma Gupta, Gwenn Hansen, Yi Hu, Wenhu Huang, Crystal Jaing, Billie Wayne Key, Jr., Peter Kipp, Buckley Kohlhauff, Zhi-Qing Ma, Diane Markesich, Robert Payne, David G. Potter, Ny Qian, Joseph Shaw, Jeff Schrick, Zheng-Zheng Shi, Mary Jean Sparks, Isaac Van Sligtenhorst, Peter Vogel, Wade Walke, Nianhua Xu, Qichao Zhu, Christophe Person, Arthur T. Sands

Proc Natl Acad Sci U S A. 2003 Nov 25; 100(24): 14109–14114. Published online 2003 Nov 10. doi: 10.1073/pnas.2336103100

Correction in:: Proc Natl Acad Sci U S A. 2004 Mar 23; 101(12): 4332.

PMCID:: PMC283554

Abstract Article PDF–481K

Select item 13924118.

Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences

Mammalian Gene Collection (MGC) Program Team

Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899

PMCID:: PMC139241

Abstract Article PDF–118K

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