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Items: 1 to 20 of 58

1.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
2.
A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon
Nir Cohen, Naama Aviram, Maya Schuldiner
EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385
PMCID:
PMC10233368
AbstractArticlePDF–1.2M
3.
CUP1 Metallothionein from Healthy Saccharomyces cerevisiae Colocalizes to the Cytosol and Mitochondrial Intermembrane Space
Joshua E. Kim, Paul A. Lindahl
Biochemistry. 2023 Jan 3; 62(1): 62–74. Published online 2022 Dec 12. doi: 10.1021/acs.biochem.2c00481
PMCID:
PMC9813906
AbstractArticlePDF–5.2M
4.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
5.
Genome-Scale Screening and Combinatorial Optimization of Gene Overexpression Targets to Improve Cadmium Tolerance in Saccharomyces cerevisiae
Yongcan Chen, Jun Liang, Zhicong Chen, Bo Wang, Tong Si
Front Microbiol. 2021; 12: 662512. Published online 2021 Jul 14. doi: 10.3389/fmicb.2021.662512
PMCID:
PMC8318699
AbstractArticlePDF–1.4M
6.
The N-Terminal Tail of Histone H3 Regulates Copper Homeostasis in Saccharomyces cerevisiae
Sakshi Singh, Rakesh Kumar Sahu, Raghuvir Singh Tomar
Mol Cell Biol. 2021 Feb; 41(2): e00210-20. Prepublished online 2020 Nov 30. Published online 2021 Jan 25. doi: 10.1128/MCB.00210-20
PMCID:
PMC8093488
AbstractArticlePDF–3.8M
7.
Analysis of the TORC1 interactome reveals a spatially distinct function of TORC1 in mRNP complexes
Yeonji Chang, Gyubum Lim, Won-Ki Huh
J Cell Biol. 2021 Apr 5; 220(4): e201912060. Published online 2021 Feb 10. doi: 10.1083/jcb.201912060
PMCID:
PMC7879482
AbstractArticlePDF–5.9M
8.
Catalytically inactive Cas9 impairs DNA replication fork progression to induce focal genomic instability
Goro Doi, Satoshi Okada, Takehiro Yasukawa, Yuki Sugiyama, Siqin Bala, Shintaro Miyazaki, Dongchon Kang, Takashi Ito
Nucleic Acids Res. 2021 Jan 25; 49(2): 954–968. Published online 2021 Jan 4. doi: 10.1093/nar/gkaa1241
PMCID:
PMC7826275
AbstractArticlePDF–1.5M
9.
Chromatographic detection of low-molecular-mass metal complexes in the cytosol of Saccharomyces cerevisiae
Trang Q. Nguyen, Joshua E. Kim, Hayley N. Brawley, Paul A. Lindahl
Metallomics. 2020 Jul 1; 12(7): 1094–1105. Published online 2020 Apr 17. doi: 10.1039/c9mt00312f
PMCID:
PMC7497409
AbstractArticle
10.
Isolated Saccharomyces cerevisiae vacuoles contain low-molecular-mass transition-metal polyphosphate complexes
Trang Q. Nguyen, Nathaniel Dziuba, Paul A. Lindahl
Metallomics. Author manuscript; available in PMC 2020 Apr 22.
Published in final edited form as: Metallomics. 2019 Jul 17; 11(7): 1298–1309. doi: 10.1039/c9mt00104b
PMCID:
PMC7175454
AbstractArticlePDF–1.2M
11.
Single-Molecule Analysis Reveals Linked Cycles Of RSC Chromatin Remodeling and Ace1p Transcription Factor Binding in Yeast
Gunjan D. Mehta, David A. Ball, Peter R. Eriksson, Razvan. V. Chereji, David J. Clark, James G. McNally, Tatiana S. Karpova
Mol Cell. Author manuscript; available in PMC 2019 Dec 6.
Published in final edited form as: Mol Cell. 2018 Dec 6; 72(5): 875–887.e9. Published online 2018 Oct 11. doi: 10.1016/j.molcel.2018.09.009
PMCID:
PMC6289719
AbstractArticlePDF–2.5M
12.
Nanopore sequencing enables near-complete de novo assembly of Saccharomyces cerevisiae reference strain CEN.PK113-7D
Alex N. Salazar, Arthur R. Gorter de Vries, Marcel van den Broek, Melanie Wijsman, Pilar de la Torre Cortés, Anja Brickwedde, Nick Brouwers, Jean-Marc G. Daran, Thomas Abeel
FEMS Yeast Res. 2017 Nov; 17(7): fox074. Published online 2017 Sep 13. doi: 10.1093/femsyr/fox074
PMCID:
PMC5812507
AbstractArticlePDF–690K
13.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
14.
Properties of Mitotic and Meiotic Recombination in the Tandemly-Repeated CUP1 Gene Cluster in the Yeast Saccharomyces cerevisiae
Ying Zhao, Margaret Dominska, Aleksandra Petrova, Halle Bagshaw, Robert J. Kokoska, Thomas D. Petes
Genetics. 2017 Jun; 206(2): 785–800. Published online 2017 Apr 3. doi: 10.1534/genetics.117.201285
PMCID:
PMC5499186
AbstractArticlePDF–1.2M
15.
Environmental change drives accelerated adaptation through stimulated copy number variation
Ryan M. Hull, Cristina Cruz, Carmen V. Jack, Jonathan Houseley
PLoS Biol. 2017 Jun; 15(6): e2001333. Published online 2017 Jun 27. doi: 10.1371/journal.pbio.2001333
PMCID:
PMC5486974
AbstractArticlePDF–6.8M
16.
Anchoring plant metallothioneins to the inner face of the plasma membrane of Saccharomyces cerevisiae cells leads to heavy metal accumulation
Lavinia Liliana Ruta, Ya-Fen Lin, Ralph Kissen, Ioana Nicolau, Aurora Daniela Neagoe, Simona Ghenea, Atle M. Bones, Ileana Cornelia Farcasanu
PLoS One. 2017; 12(5): e0178393. Published online 2017 May 31. doi: 10.1371/journal.pone.0178393
PMCID:
PMC5451056
AbstractArticlePDF–4.9M
17.
One library to make them all: Streamlining yeast library creation by a SWAp-Tag (SWAT) strategy
Ido Yofe, Uri Weill, Matthias Meurer, Silvia Chuartzman, Einat Zalckvar, Omer Goldman, Shifra Ben-Dor, Conny Schütze, Nils Wiedemann, Michael Knop, Anton Khmelinskii, Maya Schuldiner
Nat Methods. Author manuscript; available in PMC 2016 Sep 22.
Published in final edited form as: Nat Methods. 2016 Apr; 13(4): 371–378. Published online 2016 Feb 29. doi: 10.1038/nmeth.3795
PMCID:
PMC4869835
AbstractArticlePDF–2.7M
18.
Massive Amplification at an Unselected Locus Accompanies Complex Chromosomal Rearrangements in Yeast
Agnès Thierry, Varun Khanna, Bernard Dujon
G3 (Bethesda) 2016 May; 6(5): 1201–1215. Published online 2016 Mar 4. doi: 10.1534/g3.115.024547
PMCID:
PMC4856073
AbstractArticlePDF–3.5M
19.
Natural Yeast Promoter Variants Reveal Epistasis in the Generation of Transcriptional-Mediated Noise and Its Potential Benefit in Stressful Conditions
Jian Liu, Hélène Martin-Yken, Frédéric Bigey, Sylvie Dequin, Jean-Marie François, Jean-Pascal Capp
Genome Biol Evol. 2015 Apr; 7(4): 969–984. Published online 2015 Mar 11. doi: 10.1093/gbe/evv047
PMCID:
PMC4419794
AbstractArticlePDF–547K
20.
Structures of Naturally Evolved CUP1 Tandem Arrays in Yeast Indicate That These Arrays Are Generated by Unequal Nonhomologous Recombination
Ying Zhao, Pooja K. Strope, Stanislav G. Kozmin, John H. McCusker, Fred S. Dietrich, Robert J. Kokoska, Thomas D. Petes
G3 (Bethesda) 2014 Nov; 4(11): 2259–2269. Published online 2014 Sep 17. doi: 10.1534/g3.114.012922
PMCID:
PMC4232551
AbstractArticlePDF–1.7M

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