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Select item 108724771.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 107001382.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 102333683.

A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon

Nir Cohen, Naama Aviram, Maya Schuldiner

EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385

PMCID:: PMC10233368

Abstract Article PDF–1.2M

Select item 98792934.

New insights into the regulation of Cystathionine beta synthase (CBS), an enzyme involved in intellectual deficiency in Down syndrome

Pierre Conan, Alice Léon, Noéline Caroff, Claire Rollet, Loubna Chaïr, Jennifer Martin, Frédéric Bihel, Olivier Mignen, Cécile Voisset, Gaëlle Friocourt

Front Neurosci. 2022; 16: 1110163. Published online 2023 Jan 9. doi: 10.3389/fnins.2022.1110163

PMCID:: PMC9879293

Abstract Article PDF–2.3M

Select item 98363485.

A synthetic genetic array screen for interactions with the RNA helicase DED1 during cell stress in budding yeast

Sara B Carey, Hannah M List, Ashwin Siby, Paolo Guerra, Timothy A Bolger

G3 (Bethesda) 2023 Jan; 13(1): jkac296. Published online 2022 Nov 21. doi: 10.1093/g3journal/jkac296

PMCID:: PMC9836348

Abstract Article PDF–857K

Select item 97441856.

Nutrient Signaling, Stress Response, and Inter-organelle Communication Are Non-canonical Determinants of Cell Fate

N. Ezgi Wood, Piya Kositangool, Hanaa Hariri, Ashley J. Marchand, W. Mike Henne

Cell Rep. Author manuscript; available in PMC 2022 Dec 12.

Published in final edited form as: Cell Rep. 2020 Dec 1; 33(9): 108446. doi: 10.1016/j.celrep.2020.108446

PMCID:: PMC9744185

Abstract Article PDF–3.2M

Select item 92828577.

Adaptor linked K63 di-ubiquitin activates Nedd4/Rsp5 E3 ligase

Lu Zhu, Qing Zhang, Ciro D Cordeiro, Sudeep Banjade, Richa Sardana, Yuxin Mao, Scott D Emr

eLife. 2022; 11: e77424. Published online 2022 Jun 30. doi: 10.7554/eLife.77424

PMCID:: PMC9282857

Abstract Article PDF–4.6M

Select item 92098118.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 90663749.

Exomer complex regulates protein traffic at the TGN through differential interactions with cargos and clathrin adaptor complexes

Carlos Anton-Plagaro, Noelia Sanchez, Rosario Valle, Jose Miguel Mulet, Mara C. Duncan, Cesar Roncero

FASEB J. Author manuscript; available in PMC 2022 May 4.

Published in final edited form as: FASEB J. 2021 Jun; 35(6): e21615. doi: 10.1096/fj.202002610R

PMCID:: PMC9066374

Abstract Article PDF–2.8M

Select item 900095610.

The peroxisomal exportomer directly inhibits phosphoactivation of the pexophagy receptor Atg36 to suppress pexophagy in yeast

Houqing Yu, Roarke A Kamber, Vladimir Denic

eLife. 2022; 11: e74531. Published online 2022 Apr 11. doi: 10.7554/eLife.74531

PMCID:: PMC9000956

Abstract Article PDF–1.0M

Select item 812069411.

Elevating PI3P drives select downstream membrane trafficking pathways

Noah Steinfeld, Vikramjit Lahiri, Anna Morrison, Shree Padma Metur, Daniel J. Klionsky, Lois S. Weisman

Mol Biol Cell. 2021 Jan 15; 32(2): 143–156. doi: 10.1091/mbc.E20-03-0191

PMCID:: PMC8120694

Abstract Article PDF–3.3M

Select item 811258412.

Plasma membrane to vacuole traffic induced by glucose starvation requires Gga2 dependent sorting at the trans-Golgi network

Destiney Buelto, Chao-wei Hung, Quyen L. Aoh, Sagar Lahiri, Mara C. Duncan

Biol Cell. Author manuscript; available in PMC 2021 May 11.

Published in final edited form as: Biol Cell. 2020 Nov; 112(11): 349–367. Published online 2020 Sep 3. doi: 10.1111/boc.202000058

PMCID:: PMC8112584

Abstract Article PDF–2.3M

Select item 803491713.

Enhancing lifespan of budding yeast by pharmacological lowering of amino acid pools

Nathaniel L. Hepowit, Jessica K. A. Macedo, Lyndsay E. A. Young, Ke Liu, Ramon C. Sun, Jason A. MacGurn, Robert C. Dickson

Aging (Albany NY) 2021 Mar 31; 13(6): 7846–7871. Published online 2021 Mar 21. doi: 10.18632/aging.202849

PMCID:: PMC8034917

Abstract Article PDF–1.8M

Select item 787948214.

Analysis of the TORC1 interactome reveals a spatially distinct function of TORC1 in mRNP complexes

Yeonji Chang, Gyubum Lim, Won-Ki Huh

J Cell Biol. 2021 Apr 5; 220(4): e201912060. Published online 2021 Feb 10. doi: 10.1083/jcb.201912060

PMCID:: PMC7879482

Abstract Article PDF–5.9M

Select item 771875115.

Comprehensive Synthetic Genetic Array Analysis of Alleles That Interact with Mutation of the Saccharomyces cerevisiae RecQ Helicases Hrq1 and Sgs1

Elsbeth Sanders, Phoebe A. Nguyen, Cody M. Rogers, Matthew L. Bochman

G3 (Bethesda) 2020 Dec; 10(12): 4359–4368. Published online 2020 Oct 28. doi: 10.1534/g3.120.401709

PMCID:: PMC7718751

Abstract Article PDF–1.2M

Select item 744969916.

Complementary α-arrestin-ubiquitin ligase complexes control nutrient transporter endocytosis in response to amino acids

Vasyl Ivashov, Johannes Zimmer, Sinead Schwabl, Jennifer Kahlhofer, Sabine Weys, Ronald Gstir, Thomas Jakschitz, Leopold Kremser, Günther K Bonn, Herbert Lindner, Lukas A Huber, Sebastien Leon, Oliver Schmidt, David Teis

eLife. 2020; 9: e58246. Published online 2020 Aug 3. doi: 10.7554/eLife.58246

PMCID:: PMC7449699

Abstract Article PDF–3.9M

Select item 689339517.

Yct1p, a Novel, High-Affinity, Cysteine-Specific Transporter from the Yeast Saccharomyces cerevisiae

Genetics. 2019 Dec; 213(4): 1565–1566. Published online 2019 Dec 1. doi: 10.1534/genetics.119.302809

Corrects:: Genetics. 2007 Jun; 176(2): 877–890.

PMCID:: PMC6893395

Correction PDF–601K

Select item 640055718.

Methionine triggers Ppz-mediated dephosphorylation of Art1 to promote cargo-specific endocytosis

Sora Lee, Hsuan-Chung Ho, Jessica M. Tumolo, Pi-Chiang Hsu, Jason A. MacGurn

J Cell Biol. 2019 Mar 4; 218(3): 977–992. doi: 10.1083/jcb.201712144

PMCID:: PMC6400557

Abstract Article PDF–3.2M

Select item 623296319.

Eisosomes are metabolically regulated storage compartments for APC-type nutrient transporters

Akshay Moharir, Lincoln Gay, Daniel Appadurai, James Keener, Markus Babst

Mol Biol Cell. 2018 Aug 15; 29(17): 2113–2127. doi: 10.1091/mbc.E17-11-0691

PMCID:: PMC6232963

Abstract Article PDF–3.5M

Select item 621571320.

Systematic Analysis of Complex Genetic Interactions

Elena Kuzmin, Benjamin VanderSluis, Wen Wang, Guihong Tan, Raamesh Deshpande, Yiqun Chen, Matej Usaj, Attila Balint, Mojca Mattiazzi Usaj, Jolanda van Leeuwen, Elizabeth N. Koch, Carles Pons, Andrius J. Dagilis, Michael Pryszlak, Jason Zi Yang Wang, Julia Hanchard, Margot Riggi, Kaicong Xu, Hamed Heydari, Bryan-Joseph San Luis, Ermira Shuteriqi, Hongwei Zhu, Nydia Van Dyk, Sara Sharifpoor, Michael Costanzo, Robbie Loewith, Amy Caudy, Daniel Bolnick, Grant W. Brown, Brenda J. Andrews, Charles Boone, Chad L. Myers

Science. Author manuscript; available in PMC 2018 Nov 4.

Published in final edited form as: Science. 2018 Apr 20; 360(6386): eaao1729. doi: 10.1126/science.aao1729

PMCID:: PMC6215713

Abstract Article PDF–1.9M

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