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Select item 108724771.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 107001382.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 102333683.

A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon

Nir Cohen, Naama Aviram, Maya Schuldiner

EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385

PMCID:: PMC10233368

Abstract Article PDF–1.2M

Select item 98363484.

A synthetic genetic array screen for interactions with the RNA helicase DED1 during cell stress in budding yeast

Sara B Carey, Hannah M List, Ashwin Siby, Paolo Guerra, Timothy A Bolger

G3 (Bethesda) 2023 Jan; 13(1): jkac296. Published online 2022 Nov 21. doi: 10.1093/g3journal/jkac296

PMCID:: PMC9836348

Abstract Article PDF–857K

Select item 96309865.

A balancing act: interactions within NuA4/TIP60 regulate picNuA4 function in Saccharomyces cerevisiae and humans

Phoebe Y T Lu, Alyssa C Kirlin, Maria J Aristizabal, Hilary T Brewis, Nancy Lévesque, Dheva T Setiaputra, Nikita Avvakumov, Joris J Benschop, Marian Groot Koerkamp, Frank C P Holstege, Nevan J Krogan, Calvin K Yip, Jacques Côté, Michael S Kobor

Genetics. 2022 Nov; 222(3): iyac136. Published online 2022 Sep 6. doi: 10.1093/genetics/iyac136

PMCID:: PMC9630986

Abstract Article PDF–2.2M

Select item 94789286.

Transcriptional regulator Taf14 binds DNA and is required for the function of transcription factor TFIID in the absence of histone H2A.Z

Kadri Peil, Signe Värv, Ivar Ilves, Kersti Kristjuhan, Henel Jürgens, Arnold Kristjuhan

J Biol Chem. 2022 Sep; 298(9): 102369. Published online 2022 Aug 13. doi: 10.1016/j.jbc.2022.102369

PMCID:: PMC9478928

Abstract Article PDF–1.0M

Select item 92098117.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 90349028.

DNA Translocation and Loop Formation Mechanism of Chromatin Remodeling by SWI/SNF and RSC

Yongli Zhang, Corey L. Smith, Anjanabha Saha, Stephan W. Grill, Shirley Mihardja, Steven B. Smith, Bradley R. Cairns, Craig L. Peterson, Carlos Bustamante

Mol Cell. Author manuscript; available in PMC 2022 Apr 23.

Published in final edited form as: Mol Cell. 2006 Nov 17; 24(4): 559–568. doi: 10.1016/j.molcel.2006.10.025

PMCID:: PMC9034902

Abstract Article PDF–1.3M

Select item 90056959.

SWI/SNF and the histone chaperone Rtt106 drive expression of the Pleiotropic Drug Resistance network genes

Vladislav N. Nikolov, Dhara Malavia, Takashi Kubota

Nat Commun. 2022; 13: 1968. Published online 2022 Apr 12. doi: 10.1038/s41467-022-29591-z

PMCID:: PMC9005695

Abstract Article PDF–3.2M

Select item 889075210.

SWI/SNF senses carbon starvation with a pH-sensitive low-complexity sequence

J Ignacio Gutierrez, Gregory P Brittingham, Yonca Karadeniz, Kathleen D Tran, Arnob Dutta, Alex S Holehouse, Craig L Peterson, Liam J Holt

eLife. 2022; 11: e70344. Published online 2022 Feb 7. doi: 10.7554/eLife.70344

PMCID:: PMC8890752

Abstract Article PDF–6.1M

Select item 857691711.

Tubulin isotypes optimize distinct spindle positioning mechanisms during yeast mitosis

Emmanuel T. Nsamba, Abesh Bera, Michael Costanzo, Charles Boone, Mohan L. Gupta, Jr.

J Cell Biol. 2021 Dec 6; 220(12): e202010155. Published online 2021 Nov 5. doi: 10.1083/jcb.202010155

PMCID:: PMC8576917

Abstract Article PDF–7.4M

Select item 820367812.

A genome-wide portrait of pervasive drug contaminants

Joseph Uche Ogbede, Guri Giaever, Corey Nislow

Sci Rep. 2021; 11: 12487. Published online 2021 Jun 14. doi: 10.1038/s41598-021-91792-1

PMCID:: PMC8203678

Abstract Article PDF–3.7M

Select item 819177513.

FACT interacts with Set3 HDAC and fine-tunes GAL1 transcription in response to environmental stimulation

He Leng, Shaofeng Liu, Yang Lei, Yuantao Tang, Shijia Gu, Jiazhi Hu, She Chen, Jianxun Feng, Qing Li

Nucleic Acids Res. 2021 Jun 4; 49(10): 5502–5519. Published online 2021 May 8. doi: 10.1093/nar/gkab312

PMCID:: PMC8191775

Abstract Article PDF–3.0M

Select item 816858714.

Distinct roles for RSC and SWI/SNF chromatin remodelers in genomic excision repair

Kaitlynne A. Bohm, Amelia J. Hodges, Wioletta Czaja, Kathiresan Selvam, Michael J. Smerdon, Peng Mao, John J. Wyrick

Genome Res. 2021 Jun; 31(6): 1047–1059. doi: 10.1101/gr.274373.120

PMCID:: PMC8168587

Abstract Article PDF–3.6M

Select item 803514515.

Chromatin regulatory genes differentially interact in networks to facilitate distinct GAL1 activity and noise profiles

David F. Moreno, Murat Acar

Curr Genet. Author manuscript; available in PMC 2022 Apr 1.

Published in final edited form as: Curr Genet. 2021 Apr; 67(2): 267–281. Published online 2020 Nov 7. doi: 10.1007/s00294-020-01124-5

PMCID:: PMC8035145

Abstract Article PDF–1.0M

Select item 771875116.

Comprehensive Synthetic Genetic Array Analysis of Alleles That Interact with Mutation of the Saccharomyces cerevisiae RecQ Helicases Hrq1 and Sgs1

Elsbeth Sanders, Phoebe A. Nguyen, Cody M. Rogers, Matthew L. Bochman

G3 (Bethesda) 2020 Dec; 10(12): 4359–4368. Published online 2020 Oct 28. doi: 10.1534/g3.120.401709

PMCID:: PMC7718751

Abstract Article PDF–1.2M

Select item 734078817.

Structure of the yeast Swi/Snf complex in a nucleosome free state

Chengcheng Wang, Zhouyan Guo, Xiechao Zhan, Fenghua Yang, Mingxuan Wu, Xiaofeng Zhang

Nat Commun. 2020; 11: 3398. Published online 2020 Jul 7. doi: 10.1038/s41467-020-17229-x

Correction in:: Nat Commun. 2020; 11: 5739.

PMCID:: PMC7340788

Abstract Article PDF–3.4M

Select item 731904918.

Cryo-EM structure of SWI/SNF chromatin remodeling complex with nucleosome

Yan Han, Alexis A Reyes, Sara Malik, Yuan He

Nature. Author manuscript; available in PMC 2020 Sep 11.

Published in final edited form as: Nature. 2020 Mar; 579(7799): 452–455. Published online 2020 Mar 11. doi: 10.1038/s41586-020-2087-1

PMCID:: PMC7319049

Abstract Article PDF–3.4M

Select item 681424019.

Experimental evolution reveals a general role for the methyltransferase Hmt1 in noise buffering

Shu-Ting You, Yu-Ting Jhou, Cheng-Fu Kao, Jun-Yi Leu

PLoS Biol. 2019 Oct; 17(10): e3000433. Published online 2019 Oct 15. doi: 10.1371/journal.pbio.3000433

PMCID:: PMC6814240

Abstract Article PDF–1.1M

Select item 666992220.

Endosome and Golgi‐associated degradation (EGAD) of membrane proteins regulates sphingolipid metabolism

Oliver Schmidt, Yannick Weyer, Verena Baumann, Michael A Widerin, Sebastian Eising, Mihaela Angelova, Alexander Schleiffer, Leopold Kremser, Herbert Lindner, Matthias Peter, Florian Fröhlich, David Teis

EMBO J. 2019 Aug 1; 38(15): e101433. Published online 2019 May 27. doi: 10.15252/embj.2018101433